Docker container to convert PyDesigner outputs to AFQ-compatible dt6.mat
After downloading/cloning thisG it repo, use terminal to cd into it and run:
docker build -t dmri/makedt6frompyd .
To convert PyDesigner output to dt6.mat
, please ensure that you
have successfully run PyDesigner. Also ensure that you have the
following paths per subject:
Required Paths:
- B0 (.nii or .nii.gz)
Optional Paths:
- T1 anatomical image (.nii or .nii.gz)
- Output dt.6
Then, execute this container with:
docker run -it --rm \
-v [SOURCE DIRECTORY]:[MOUNT DIRECTORY] \
dmri/makedt6frompyd [MOUNT DIRECTORY/../PATH TO B0] [MOUNT DIRECTORY/../PATH TO T1] [MOUNT DIRECTORY/../dt6.mat]
Note: Please ensure that path to files is relative to [MOUNT DIRECTORY]
The general syntax for running this container is:
docker run [OPTIONS] dmri/makedt6frompyd [PATH TO B0] [PATH TO T1] [PATH TO OUTPUT DT6.MAT]