This repository contains a Bash script that fixes output-DoseState.R file output by RADDOSE-3D.

Steps

1. Install Chromium:

   • The script uses dnf to install Chromium on Fedora.
   • Ensures Chromium is in the PATH and accessible.

2. Instructions for Installing webshot2:

   • The script will install webshot2 in R.

3. Modify the R Script:

   • The script replaces rgl.viewpoint with view3d.
   • And it also replaces rgl.snapshot with snapshot3d including the width and height parameters.

4. Run the R Script:

   • The Bash script runs the modified R script.

5. Result:

   • The generated images are saved in the working directory.

Usage

1. Copy fix.sh to your working directory with the results from RADDOSE-3D
2. Make it executable chmod +x fix.sh
3. Run it with ./fix.sh...

Hopefully you can see the images now.

Advice

Always check your contourlevels. This works for b3x11: contourlevels<- c(0.05, 0.50, 2.00) # MGy