error while installing peer

.gitignore

@@ -1 +1,11 @@
-./build/*
+build/*
+CMakeFiles/*
+cran/peer/DESCRIPTION
+cran/peer/NAMESPACE
+cran/peer/R
+cran/peer/man
+cran/peer/src/*.cpp
+cran/peer/src/*.so
+cran/peer/src/*.h
+cran/peer_source.tgz
+cran/peer/src/alglib

CHANGELOG

@@ -1,3 +1,9 @@
+3/3/2011 (OS):
+* Changed python install behaviour
+* Added Readme
+* Added some basic documentation in CMakeLists.txt
+* Added Python install targets
+
 30/12/2010 (OS):
 * Changed PMatrix to be a float matrix rather than double to save space
 * Added setVerbose, getVerbose

CMakeLists.txt

@@ -0,0 +1,107 @@
+cmake_minimum_required(VERSION 2.8)
+project(PEER)
+
+#build options
+#bindings
+#PYTHON on by default
+option(BUILD_PYTHON_PACKAGE "Enable Python bindings" ON)
+#R optional
+option(BUILD_R_PACKAGE "Enable R bindings" OFF)
+
+#build stuff
+option(BUILD_UNIVERSAL "Build both 32 and 64 bit versions" OFF)
+
+#compile i386+x86_64 universal binaries on OS X
+if (BUILD_UNIVERSAL)
+IF(${CMAKE_SYSTEM_NAME} MATCHES "Darwin")
+SET(CMAKE_OSX_ARCHITECTURES "i386;x86_64")
+ENDIF(${CMAKE_SYSTEM_NAME} MATCHES "Darwin")
+endif (BUILD_UNIVERSAL)
+
+## Documentation for final package
+# manual installation paths
+
+##PYTHON build options##
+# Path to python executable. If specified peer is built against this
+# python version, otherwise "which python" is used for auto-detection
+#SET(PYTHON_EXECUTABLE "")
+#Python include directory 
+#normally there is no need to specify them;instead these are
+#auto-determined from the location of the binary.
+#SET(PYTHON_INCLUDE_DIRS "")
+#Python install directory
+#If specified, the peer module will be installed here. Otherwise the
+#default site-packages location of the respective python installation
+#is used. 
+#SET(PYTHON_INSTDIR "")
+#Numpy header fiels.
+#Usually there is no need to specify them as they are automatically
+#determined from the python binary.
+#Note: it is vital that peer is built against the exact same python
+#installation that you are aiming to use.
+#SET(NUMPY_INCLUDE_DIR "")
+#
+##/PYTHON END##
+
+
+##R build options###
+#set(R_EXECUTABLE "")
+#R executable 
+#set(R_HOME "")
+#R home directory
+#set(R_H "")
+#R include directory for headers
+#set(R_INCLUDEDIR "")
+#R include dir
+#set(LIBR_SO)
+#R dylib or dynamic link SO 
+##/R END##
+
+
+# OLI's build options
+#set(LIBR_SO "/opt/local/lib/R/lib/x86_64/libR.dylib")
+##/R END
+
+
+
+# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
+# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
+
+#There are lots of scripts with cmake
+#for finding external libraries. 
+#see /usr/local/share/cmake-2.6/Modules/Find*.cmake for more examples
+
+find_package(SWIG REQUIRED)
+include(${SWIG_USE_FILE})
+
+include_directories(${CMAKE_CURRENT_SOURCE_DIR})
+set(CMAKE_SWIG_FLAGS "")
+
+set(CMAKE_MODULE_PATH "${PEER_SOURCE_DIR}/cmake" ${CMAKE_MODULE_PATH})
+include_directories(./include)
+
+add_definitions(-g -Wextra -D_BSD_SOURCE)
+
+#fPic while compiling on
+#this seems to be needed on some linux systems
+#set(CMAKE_CXX_FLAGS "-fPIC -O3 -march=core2")
+set(CMAKE_CXX_FLAGS "-fPIC")
+
+include_directories(./External/alglib/src)
+
+#add Cmake modules
+add_subdirectory(./External/alglib/src)
+add_subdirectory(./External/csv_parser)
+add_subdirectory(./src)
+
+IF (BUILD_PEERTOOL)
+add_subdirectory(./External/yaml-cpp)
+endif (BUILD_PEERTOOL)
+#### build external interface (optional) #####
+if (BUILD_PYTHON_PACKAGE)
+add_subdirectory(./python)
+endif (BUILD_PYTHON_PACKAGE)
+if (BUILD_R_PACKAGE)
+add_subdirectory(./R)
+endif (BUILD_R_PACKAGE)
+

External/Eigen

@@ -0,0 +1 @@
+./Eigen-3.1.0-alpha2/Eigen

External/Eigen-3.1.0-alpha2/.hg_archival.txt

@@ -0,0 +1,4 @@
+repo: 8a21fd850624c931e448cbcfb38168cb2717c790
+node: 304c88ca3affc16dd0b008b1104873986edd77af
+branch: default
+tag: 3.1.0-alpha2

External/Eigen-3.1.0-alpha2/.hgeol

@@ -0,0 +1,8 @@
+[patterns]
+scripts/*.in = LF
+debug/msvc/*.dat = CRLF
+unsupported/test/mpreal/*.* = CRLF
+** = native
+
+[repository]
+native = LF

External/Eigen-3.1.0-alpha2/.hgignore

@@ -0,0 +1,32 @@
+syntax: glob
+qrc_*cxx
+*.orig
+*.pyc
+*.diff
+diff
+*.save
+save
+*.old
+*.gmo
+*.qm
+core
+core.*
+*.bak
+*~
+build*
+*.moc.*
+*.moc
+ui_*
+CMakeCache.txt
+tags
+.*.swp
+activity.png
+*.out
+*.php*
+*.log
+*.orig
+*.rej
+log
+patch
+a
+a.*

External/Eigen-3.1.0-alpha2/.hgtags

@@ -0,0 +1,18 @@
+2db9468678c6480c9633b6272ff0e3599d1e11a3 2.0-beta3
+375224817dce669b6fa31d920d4c895a63fabf32 2.0-beta1
+3b8120f077865e2a072e10f5be33e1d942b83a06 2.0-rc1
+19dfc0e7666bcee26f7a49eb42f39a0280a3485e 2.0-beta5
+7a7d8a9526f003ffa2430dfb0c2c535b5add3023 2.0-beta4
+7d14ad088ac23769c349518762704f0257f6a39b 2.0.1
+b9d48561579fd7d4c05b2aa42235dc9de6484bf2 2.0-beta6
+e17630a40408243cb1a51ad0fe3a99beb75b7450 before-hg-migration
+eda654d4cda2210ce80719addcf854773e6dec5a 2.0.0
+ee9a7c468a9e73fab12f38f02bac24b07f29ed71 2.0-beta2
+d49097c25d8049e730c254a2fed725a240ce4858 after-hg-migration
+655348878731bcb5d9bbe0854077b052e75e5237 actual-start-from-scratch
+12a658962d4e6dfdc9a1c350fe7b69e36e70675c 3.0-beta1
+5c4180ad827b3f869b13b1d82f5a6ce617d6fcee 3.0-beta2
+7ae24ca6f3891d5ac58ddc7db60ad413c8d6ec35 3.0-beta3
+c40708b9088d622567fecc9208ad4a426621d364 3.0-beta4
+b6456624eae74f49ae8683d8e7b2882a2ca0342a 3.0-rc1
+a810d5dbab47acfe65b3350236efdd98f67d4d8a 3.1.0-alpha1

External/Eigen-3.1.0-alpha2/.krazy

@@ -0,0 +1,3 @@
+SKIP /disabled/
+SKIP /bench/
+SKIP /build/