vmdAssist
vmdAssist is a VMD extension with tools that help us edit or create new structures like nanotube and nano torus.
Features:
- Change view direction
- Show Box button
- Show XYZ axes
- Create Nanotube, Nanotorus, Spiral tube, and Spiral sheet from any 2D sheet structure.
- Sheet to Nanotube
- Sheet to Nanotorus
- Sheet to Spiral tube
- Sheet to Spiral sheet
- Translating and rotating structure
- Calculating geometric center. move the geometric center to a specific location or center of the box
- Guess simulation box size
- Change atom attributes like name, type, mass, or charge
- Supercell builder
- Combine Structures
- Extract part of a structure
- LAMMPS data file Import/Export