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Update README
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ncaptier committed Jul 4, 2024
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Expand Up @@ -78,11 +78,6 @@ additional computational tools to use stabilized-ica with omics data and interpr
independent component analysis (ICA) to bulk and single-cell molecular profiles, interpretation of the results in
terms of biological functions and correlation with metadata. It uses the stabilized-ica package as its computational
core. In particular, it comes with Graphical User interface providing a no-code access to all of its functionnalities.
```
If you use BIODICA in a scientific publication, we would appreciate citation to the following paper:
Nicolas Captier, Jane Merlevede, Askhat Molkenov, Ainur Seisenova, Altynbek Zhubanchaliyev, Petr V Nazarov, Emmanuel Barillot, Ulykbek Kairov, Andrei Zinovyev, BIODICA: a computational environment for Independent Component Analysis of omics data, Bioinformatics, Volume 38, Issue 10, 15 May 2022, Pages 2963–2964, https://doi.org/10.1093/bioinformatics/btac204
```

## Examples

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cg.export_json("example.json")
```

## Citing stabilized-ica

If you use stabilized-ica in a scientific publication, we would appreciate citation to the following paper:

```
Nicolas Captier, Jane Merlevede, Askhat Molkenov, Ainur Seisenova, Altynbek Zhubanchaliyev, Petr V Nazarov, Emmanuel Barillot, Ulykbek Kairov, Andrei Zinovyev, BIODICA: a computational environment for Independent Component Analysis of omics data, Bioinformatics, Volume 38, Issue 10, 15 May 2022, Pages 2963–2964, https://doi.org/10.1093/bioinformatics/btac204
```
## Acknowledgements

This package was created as a part of the PhD project of Nicolas Captier in the [Computational Systems Biology of Cancer group](http://sysbio.curie.fr) of Institut Curie.
This package was created as a part of the PhD project of Nicolas Captier in the [Computational Systems Biology of Cancer group](https://institut-curie.org/team/barillot) of Institut Curie.

## References

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