soilDB 2.8.4

.Rbuildignore

@@ -16,6 +16,6 @@ README.Rmd
 ^CRAN-SUBMISSION$
 ^data-raw$
 ^CITATION\.cff$
-^doc$
 ^Meta$
 ^LICENSE\.md$
+^doc$

DESCRIPTION

@@ -23,3 +23,4 @@ Language: en-US
 Roxygen: list(markdown = TRUE)
 LazyData: false
 VignetteBuilder: knitr
+NeedsCompilation: no

NEWS.md

@@ -3,6 +3,8 @@
    - generating `gpkg_contents` for GeoPackage files failed to add entries for "features" data_type
    - `filename` argument not properly handled in some cases
  - `SDA_query()` handle another possible failure point in error handling code
+ - `createStaticNASIS()` use `odbc::dbListFields()` instead of `odbc::odbcConnectionColumns()`
+ - fetchNASIS Vignette
 
 # soilDB 2.8.3 (2024-06-11)
  - Updates to SoilWeb web coverage services

R/WCS-utils.R

@@ -696,7 +696,7 @@ WCS_details <- function(wcs = c('mukey', 'ISSR800', 'soilColor')) {
   'hi_ssurgo' = list(
     dsn = 'hi_ssurgo',
     type = 'GEOTIFF_FLOAT',
-    desc = 'HI map unit keys (experimental)',
+    desc = 'HI map unit keys',
     vintage = 'FY2024',
     na = 4294967295,
     res = 30,
@@ -706,7 +706,7 @@ WCS_details <- function(wcs = c('mukey', 'ISSR800', 'soilColor')) {
   'pr_ssurgo' = list(
     dsn = 'pr_ssurgo',
     type = 'GEOTIFF_FLOAT',
-    desc = 'PR map unit keys (experimental)',
+    desc = 'PR map unit keys',
     vintage = 'FY2024',
     na = 4294967295,
     res = 30,

R/fetchHenry.R

@@ -134,7 +134,7 @@ month2season <- function(x) {
   return(season)
 }
 
-## experimental function for padding daily time-series with NA in the presence of missing days
+## function for padding daily time-series with NA in the presence of missing days
 ## must be run on subsets defined by year
 .fill_missing_days <- function(x) {
 

R/fetchKSSL.R

@@ -165,9 +165,8 @@
 #' Download soil characterization and morphologic data via BBOX, MLRA, or soil
 #' series name query, from the KSSL database.
 #'
-#' This is an experimental interface to a subset for the most commonly used
-#' data from a snapshot of KSSL (lab characterization) and NASIS (morphologic)
-#' data.
+#' This interface has largely been superseded by the Soil Data Access
+#'snapshot of the Laboratory Data Mart, available via `fetchLDM()`.
 #'
 #' Series-queries are case insensitive. Series name is based on the "correlated
 #' as" field (from KSSL snapshot) when present.  The "sampled as"

R/fetchOSD.R

@@ -86,7 +86,7 @@
 #'   \item{pmorigin}{empirical probabilities for parent material origin, derived from the current SSURGO snapshot}
 #'   \item{mlra}{empirical MLRA membership values, derived from the current SSURGO snapshot}
 #'   \item{ecoclassid}{area cross-tabulation of ecoclassid by soil series name, derived from the current SSURGO snapshot, major components only}
-#'   \item{climate}{experimental climate summaries from PRISM stack (CONUS only)}
+#'   \item{climate}{climate summaries from PRISM stack (CONUS only)}
 #'
 #'   \item{NCCPI}{select quantiles of NCCPI and Irrigated NCCPI, derived from the current SSURGO snapshot}
 #'

README.Rmd

@@ -5,7 +5,7 @@ output: md_document
 [![CRAN status](https://badges.cranchecks.info/worst/soilDB.svg)](https://cran.r-project.org/web/checks/check_results_soilDB.html)
 [![Development Version](https://ncss-tech.r-universe.dev/badges/soilDB)](https://ncss-tech.r-universe.dev/)
 [![R-CMD-check Build Status](https://github.com/ncss-tech/soilDB/actions/workflows/R-CMD-check.yml/badge.svg)](https://github.com/ncss-tech/soilDB/actions)
-[![Total CRAN Downloads](https://cranlogs.r-pkg.org/badges/soilDB)](https://cran.r-project.org/package=soilDB)
+[![Monthly CRAN Downloads](https://cranlogs.r-pkg.org/badges/soilDB)](https://cran.r-project.org/package=soilDB)
 ![CRAN/METACRAN](https://img.shields.io/cran/l/soilDB)
 [![soilDB Manual](https://img.shields.io/badge/docs-HTML-informational)](https://ncss-tech.github.io/soilDB/)
 
@@ -38,7 +38,8 @@ soilDB_CRAN_VERSION <- .getLatestCRANRelease()
 # get installed version
 soilDB_INSTALLED_VERSION <- packageVersion("soilDB")
 
-if (soilDB_INSTALLED_VERSION > soilDB_CRAN_VERSION) {
+# rebuilding readme locally, use installed version
+if (soilDB::local_NASIS_defined() && (soilDB_INSTALLED_VERSION > soilDB_CRAN_VERSION)) {
   .update_CITATION(soilDB_INSTALLED_VERSION)
 } else {
   .update_CITATION(soilDB_CRAN_VERSION)

README.md

@@ -6,7 +6,7 @@ status](https://badges.cranchecks.info/worst/soilDB.svg)](https://cran.r-project
 Version](https://ncss-tech.r-universe.dev/badges/soilDB)](https://ncss-tech.r-universe.dev/)
 [![R-CMD-check Build
 Status](https://github.com/ncss-tech/soilDB/actions/workflows/R-CMD-check.yml/badge.svg)](https://github.com/ncss-tech/soilDB/actions)
-[![Total CRAN
+[![Monthly CRAN
 Downloads](https://cranlogs.r-pkg.org/badges/soilDB)](https://cran.r-project.org/package=soilDB)
 ![CRAN/METACRAN](https://img.shields.io/cran/l/soilDB) [![soilDB
 Manual](https://img.shields.io/badge/docs-HTML-informational)](https://ncss-tech.github.io/soilDB/)
@@ -61,6 +61,7 @@ Get the development version from GitHub:
     -   [`fetchSDA_spatial`](http://ncss-tech.github.io/soilDB/reference/fetchSDA_spatial.html)
     -   [`SDA_query`](http://ncss-tech.github.io/soilDB/reference/SDA_query.html)
     -   [`SDA_spatialQuery`](http://ncss-tech.github.io/soilDB/reference/SDA_spatialQuery.html)
+    -   [`fetchLDM`](http://ncss-tech.github.io/soilDB/reference/fetchLDM.html)
     -   “SSURGO On Demand” Queries
         -   [`get_SDA_hydric`](http://ncss-tech.github.io/soilDB/reference/get_SDA_hydric.html)
         -   [`get_SDA_interpretation`](http://ncss-tech.github.io/soilDB/reference/get_SDA_interpretation.html)

vignettes/wcs-ssurgo.Rmd

@@ -16,6 +16,7 @@ knitr::opts_chunk$set(
   fig.align = 'center',
   fig.width = 8,
   fig.height = 6, 
+  dpi = 36,
   tidy = FALSE,
   verbose = FALSE,
   # run when NASIS is defined or when R_SOILDB_SKIP_LONG_EXAMPLES is FALSE