Use rounding for non-stochastic dispersers from cell (#205)

* Use rounding for non-stochastic dispersers from cell

Update to PoPS Core with flooring instead of rounding in computation of number of non-stochastic dispersers from cell.

* update renv

* update github test coverage yaml

* update documentation

* test lock fiile with dev dependicies.

* update workflow for checks

* update to newest pops-core main

---------

Co-authored-by: unknown <cjones1688@gmail.com>

.github/workflows/R-CMD-check.yaml

@@ -6,7 +6,7 @@ on:
   pull_request:
     branches: [main]
 
-name: R-CMD-check
+name: R-CMD-check.yaml
 
 jobs:
   R-CMD-check:
@@ -38,13 +38,22 @@ jobs:
 
       - name: Install macOS system dependencies
         if: runner.os == 'macOS'
-        run: brew install gdal proj fribidi
+        run: brew install gdal proj
+
+      - name: Install Linux system dependencies
+        if: runner.os == 'Linux'
+        run: |
+          sudo apt install \
+            libudunits2-dev \
+            libgdal-dev \
+            libgeos-dev \
+            libproj-dev \
 
       - uses: r-lib/actions/setup-renv@v2
-      - uses: r-lib/actions/setup-r-dependencies@v2
-        with:
-          extra-packages: any::rcmdcheck
-          needs: check
+      # - uses: r-lib/actions/setup-r-dependencies@v2
+      #   with:
+      #     extra-packages: any::rcmdcheck
+      #     needs: check
 
       - uses: r-lib/actions/check-r-package@v2
         with:

.github/workflows/test-coverage.yaml

@@ -6,7 +6,7 @@ on:
   pull_request:
     branches: [main, master]
 
-name: test-coverage
+name: test-coverage.yaml
 
 jobs:
   test-coverage:
@@ -15,18 +15,20 @@ jobs:
       GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
 
     steps:
-      - uses: actions/checkout@v3
+      - uses: actions/checkout@v4
+
+      - uses: r-lib/actions/setup-pandoc@v2
 
       - uses: r-lib/actions/setup-r@v2
         with:
           use-public-rspm: true
 
       - uses: r-lib/actions/setup-renv@v2
 
-      - uses: r-lib/actions/setup-r-dependencies@v2
-        with:
-          extra-packages: any::covr
-          needs: coverage
+      # - uses: r-lib/actions/setup-r-dependencies@v2
+      #   with:
+      #     extra-packages: any::covr
+      #     needs: coverage
 
       - name: Test coverage
         run: |

DESCRIPTION

@@ -52,5 +52,5 @@ Suggests:
     pkgdown
 LinkingTo: 
     Rcpp
-RoxygenNote: 7.2.3
+RoxygenNote: 7.3.2
 VignetteBuilder: knitr

inst/include/host_pool.hpp

@@ -307,8 +307,7 @@ class HostPool : public HostPoolInterface<RasterIndex>
             }
         }
         else {
-            dispersers_from_cell =
-                static_cast<int>(std::floor(lambda * infected_at(row, col)));
+            dispersers_from_cell = std::lround(lambda * infected_at(row, col));
         }
         return dispersers_from_cell;
     }