Update annotate_maf_vcf.mk

ndbrown6 · Apr 12, 2022 · 0a58c23 · 0a58c23
1 parent 09d1554
commit 0a58c23
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/vcf_tools/annotate_maf_vcf.mk b/vcf_tools/annotate_maf_vcf.mk
@@ -11,7 +11,7 @@ vcf/%.vcf : vcf/%.maf
 							   $$(MAF2VCF) \
 							   --input-maf $$(<) \
 							   --output-dir vcf \
-							   --output-vcf vcf/$1.vcf \
+							   --output-vcf $$(@) \
 							   --ref-fasta $$(HOME)/share/lib/resource_files/VEP/GRCh37/homo_sapiens/99_GRCh37/Homo_sapiens.GRCh37.75.dna.primary_assembly.fa.gz")
 
 endef