Update bwa_split.mk

ndbrown6 · Jul 25, 2022 · 2a0c6aa · 2a0c6aa
1 parent c36e553
commit 2a0c6aa
Showing 1 changed file with 2 additions and 2 deletions.
diff --git a/split_workflows/bwa_split.mk b/split_workflows/bwa_split.mk
@@ -54,10 +54,10 @@ GATK_MEM_THREAD = 2G
 
 define merge-fastq
 bwamem/$1/$1_R1.fastq.gz : $$(foreach split,$2,$$(word 1, $$(fq.$$(split))))
-	$$(call RUN,-c -n 12 -s 0.5G -m 1G -w 72:00:00 -v $(PIGZ_ENV),"$$(PIGZ) -cd -p 12 $$(^) | $$(PIGZ) -c -p 12 > $$(@)")
+	$$(call RUN,-c -n 12 -s 0.5G -m 1G -w 24:00:00 -v $(PIGZ_ENV),"$$(PIGZ) -cd -p 12 $$(^) | $$(PIGZ) -c -p 12 > $$(@)")
 
 bwamem/$1/$1_R2.fastq.gz : $$(foreach split,$2,$$(word 2, $$(fq.$$(split))))
-	$$(call RUN,-c -n 12 -s 0.5G -m 1G -w 72:00:00 -v $(PIGZ_ENV),"$$(PIGZ) -cd -p 12 $$(^) | $$(PIGZ) -c -p 12 > $$(@)")
+	$$(call RUN,-c -n 12 -s 0.5G -m 1G -w 24:00:00 -v $(PIGZ_ENV),"$$(PIGZ) -cd -p 12 $$(^) | $$(PIGZ) -c -p 12 > $$(@)")
 endef
 $(foreach sample,$(SAMPLES),\
 		$(eval $(call merge-fastq,$(sample),$(split.$(sample)))))