WIP #24
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| name: test | |
| on: | |
| push: | |
| branches: | |
| - before_read_from_file_commit | |
| pull_request: | |
| branches: | |
| - before_read_from_file_commit | |
| jobs: | |
| test: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout repository | |
| uses: actions/checkout@v2 | |
| - name: Set up Python | |
| uses: actions/setup-python@v2 | |
| with: | |
| python-version: '3.8' | |
| - name: Install dependencies | |
| run: | | |
| sudo apt-get update | |
| sudo apt-get install -y samtools | |
| sudo apt-get install -y nextflow | |
| sudo apt-get install -y tr | |
| sudo apt-get install -y gzip | |
| - name: Run tests | |
| run: | | |
| chmod +x run_test.sh | |
| ./run_test.sh | |
| - name: Upload test results | |
| if: always() | |
| uses: actions/upload-artifact@v2 | |
| with: | |
| name: test-results | |
| path: | | |
| ${tmp}/test.log.out | |
| ${tmp}/emseq_metadata_report.html | |
| ${tmp}/emseq_metadata_timeline.html | |
| ${tmp}/emseq_metadata_dag.html |