Better handling of object and attribute names in context plots.

R/plot_context.R

@@ -92,11 +92,11 @@ plot_context <- function(I, to_latex, ...) {
 
   # Heatmap
   p <- I |>
-    Matrix::as.matrix() |>
+    Matrix::as.matrix() |> t() |>
     # Data wrangling
     as.data.frame() |>
     tibble::rownames_to_column(var = "object") |>
-    tidyr::pivot_longer(cols = colnames(I)) |>
+    tidyr::pivot_longer(cols = rownames(I)) |>
     dplyr::mutate(text = glue::glue(
       "{object}, {name} is {value}"
     )) |>
@@ -115,9 +115,10 @@ plot_context <- function(I, to_latex, ...) {
     ggplot2::ylab("") +
     ggplot2::theme(legend.position = "none") +
     ggplot2::scale_y_discrete(
-      limits = rev
+      limits = rev(colnames(I))
     ) +
     ggplot2::scale_x_discrete(
+      limits = rownames(I),
       position = "top"
     )
 

cran-comments.md

@@ -1,13 +1,12 @@
 ## Test environments
 * local R installation, on MACOS BigSur 11.4, R version 4.3.0 (2023-04-21), platform: aarch64-apple-darwin20 (64-bit)
 * win-builder (devel)
-* windows-latest (release), ubuntu-20.04 (release) via GitHub actions.
+* macos-latest (release), windows-latest (release), ubuntu-20.04 (release) via GitHub actions.
 * Ubuntu Linux 20.04.1 LTS, R-release, GCC on R-hub.
-* local R with valgrind using docker
 * Default platforms using devtools::check_rhub().
 
 ## Comments
-New version with some improvements.
+New version with some improvements and several fixes for changes in other dependencies.
 
 ## R CMD check results
 There were no ERRORs, WARNINGs or NOTEs. 

doc/implications.html

@@ -975,9 +975,9 @@ <h2>Simplification Logic</h2>
 <div class="sourceCode" id="cb16"><pre class="sourceCode r"><code class="sourceCode r"><span id="cb16-1"><a href="#cb16-1" aria-hidden="true" tabindex="-1"></a>fc_I<span class="sc">$</span>implications<span class="sc">$</span><span class="fu">apply_rules</span>(<span class="at">rules =</span> <span class="fu">c</span>(<span class="st">&quot;composition&quot;</span>,</span>
 <span id="cb16-2"><a href="#cb16-2" aria-hidden="true" tabindex="-1"></a>                                        <span class="st">&quot;simplification&quot;</span>))</span>
 <span id="cb16-3"><a href="#cb16-3" aria-hidden="true" tabindex="-1"></a><span class="co">#&gt; Processing batch</span></span>
-<span id="cb16-4"><a href="#cb16-4" aria-hidden="true" tabindex="-1"></a><span class="co">#&gt; --&gt; Composition: from 12 to 12 in 0.001 secs.</span></span>
-<span id="cb16-5"><a href="#cb16-5" aria-hidden="true" tabindex="-1"></a><span class="co">#&gt; --&gt; Simplification: from 12 to 12 in 0.03 secs.</span></span>
-<span id="cb16-6"><a href="#cb16-6" aria-hidden="true" tabindex="-1"></a><span class="co">#&gt; Batch took 0.031 secs.</span></span></code></pre></div>
+<span id="cb16-4"><a href="#cb16-4" aria-hidden="true" tabindex="-1"></a><span class="co">#&gt; --&gt; Composition: from 12 to 12 in 0 secs.</span></span>
+<span id="cb16-5"><a href="#cb16-5" aria-hidden="true" tabindex="-1"></a><span class="co">#&gt; --&gt; Simplification: from 12 to 12 in 0.029 secs.</span></span>
+<span id="cb16-6"><a href="#cb16-6" aria-hidden="true" tabindex="-1"></a><span class="co">#&gt; Batch took 0.029 secs.</span></span></code></pre></div>
 <p>This enables the reduction of the cardinality and/or the size of the
 <code>ImplicationSet</code>.</p>
 <p>In addition, the “simplification” rule to remove redundancies can be
@@ -1011,8 +1011,8 @@ <h2>Entailment and equivalence of implications</h2>
 <span id="cb18-5"><a href="#cb18-5" aria-hidden="true" tabindex="-1"></a><span class="co"># where we have removed redundancies</span></span>
 <span id="cb18-6"><a href="#cb18-6" aria-hidden="true" tabindex="-1"></a>imps2<span class="sc">$</span><span class="fu">apply_rules</span>(<span class="fu">c</span>(<span class="st">&quot;simp&quot;</span>, <span class="st">&quot;rsimp&quot;</span>))</span>
 <span id="cb18-7"><a href="#cb18-7" aria-hidden="true" tabindex="-1"></a><span class="co">#&gt; Processing batch</span></span>
-<span id="cb18-8"><a href="#cb18-8" aria-hidden="true" tabindex="-1"></a><span class="co">#&gt; --&gt; Simplification: from 10 to 10 in 0.006 secs.</span></span>
-<span id="cb18-9"><a href="#cb18-9" aria-hidden="true" tabindex="-1"></a><span class="co">#&gt; --&gt; Right Simplification: from 10 to 10 in 0.023 secs.</span></span>
+<span id="cb18-8"><a href="#cb18-8" aria-hidden="true" tabindex="-1"></a><span class="co">#&gt; --&gt; Simplification: from 10 to 10 in 0.005 secs.</span></span>
+<span id="cb18-9"><a href="#cb18-9" aria-hidden="true" tabindex="-1"></a><span class="co">#&gt; --&gt; Right Simplification: from 10 to 10 in 0.024 secs.</span></span>
 <span id="cb18-10"><a href="#cb18-10" aria-hidden="true" tabindex="-1"></a><span class="co">#&gt; Batch took 0.029 secs.</span></span>
 <span id="cb18-11"><a href="#cb18-11" aria-hidden="true" tabindex="-1"></a><span class="co"># Any implication in imps2 follows from imps</span></span>
 <span id="cb18-12"><a href="#cb18-12" aria-hidden="true" tabindex="-1"></a>imps <span class="sc">%entails%</span> imps2</span>

docs/pkgdown.yml

@@ -7,5 +7,5 @@ articles:
   conceptual-scaling: conceptual-scaling.html
   extending_equivalence: extending_equivalence.html
   implications: implications.html
-last_built: 2023-11-30T10:06Z
+last_built: 2023-11-30T10:40Z