Make notebooks work with bokeh>=3 and remove bokeh<3 pin
#9026
Workflow file for this run
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| name: Windows Installer | |
| concurrency: | |
| # Don't cancel on master, creating a PR when a push workflow is already going will cancel the push workflow in favour of the PR workflow | |
| group: ${{ github.workflow }}-${{ github.ref == 'refs/heads/master' && github.run_id || github.event.number && github.head_ref || github.ref_name }} | |
| cancel-in-progress: true | |
| on: | |
| merge_group: | |
| workflow_call: | |
| inputs: | |
| tag: | |
| description: 'Release version (tag name)' | |
| default: '' | |
| required: true | |
| type: string | |
| push: | |
| branches: | |
| - master | |
| - release/** | |
| pull_request: | |
| branches: | |
| - master | |
| - release/** | |
| # TODO : https://github.com/neuronsimulator/nrn/issues/1063 | |
| # paths-ignore: | |
| # - '**.md' | |
| # - '**.rst' | |
| # - 'docs/**' | |
| env: | |
| MSYS2_ROOT: C:\msys64 | |
| jobs: | |
| WindowsInstaller: | |
| runs-on: windows-latest | |
| timeout-minutes: 45 | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| ref: ${{ inputs.tag }} | |
| - name: Retrieve rxd test data | |
| run: | | |
| git submodule update --init test/rxd/testdata | |
| shell: powershell | |
| working-directory: ${{runner.workspace}}\nrn | |
| - name: Set up Python3 | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: '3.12' | |
| - name: Download Dependencies | |
| run: | | |
| .\nrn\ci\win_download_deps.cmd | |
| shell: powershell | |
| working-directory: ${{runner.workspace}} | |
| - name: Install Dependencies | |
| run: .\nrn\ci\win_install_deps.cmd | |
| shell: powershell | |
| working-directory: ${{runner.workspace}} | |
| - name: Build and Create Installer | |
| run: | | |
| rm.exe C:\WINDOWS\system32\bash.EXE | |
| %MSYS2_ROOT%\usr\bin\bash -lc "$BUILD_SOURCESDIRECTORY/ci/win_build_cmake.sh" | |
| shell: cmd | |
| working-directory: ${{runner.workspace}}\nrn | |
| env: | |
| BUILD_SOURCESDIRECTORY: ${{runner.workspace}}\nrn | |
| # This step will set up an SSH connection on tmate.io for live debugging. | |
| # To enable it, you have to: | |
| # * add 'live-debug-win' to your PR title | |
| # * push something to your PR branch (note that just re-running the pipeline disregards the title update) | |
| - name: live debug session on failure (manual steps required, check `.github/windows.yml`) | |
| if: failure() && contains(github.event.pull_request.title, 'live-debug-win') | |
| uses: mxschmitt/action-tmate@v3 | |
| - name: Upload build artifact | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: nrn-nightly-AMD64.exe | |
| path: ${{runner.workspace}}\nrn\nrn-nightly-AMD64.exe | |
| - name: Run installer and launch .hoc associaton test | |
| run: .\ci\win_install_neuron.cmd | |
| shell: cmd | |
| working-directory: ${{runner.workspace}}\nrn | |
| - name: Test Installer | |
| run: .\ci\win_test_installer.cmd | |
| shell: cmd | |
| working-directory: ${{runner.workspace}}\nrn | |
| - name: Publish Release Installer | |
| working-directory: ${{runner.workspace}}\nrn | |
| if: inputs.tag != '' | |
| run: | | |
| gh release upload ${{ inputs.tag }} nrn-nightly-AMD64.exe | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} |