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@nexomis

Nexomis

Solution Architect in Computational Biology #DevOps #ML #BioInfo

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  1. tf_tk tf_tk Public

    terrform toolkit

    HCL

  2. terraform_nf_awsbatch terraform_nf_awsbatch Public

    HCL

  3. viral_comp viral_comp Public

    Python

  4. ghcr-macse ghcr-macse Public

    Image definition for macse: https://www.agap-ge2pop.org/macsee-pipelines/

    Dockerfile

  5. .github .github Public

  6. ghcr-augustus ghcr-augustus Public

    Augustus Docker image definition (https://github.com/Gaius-Augustus/Augustus)

    Dockerfile

Repositories

Showing 10 of 32 repositories
  • terraform_nf_awsbatch Public
    nexomis/terraform_nf_awsbatch’s past year of commit activity
    HCL 0 Apache-2.0 0 1 0 Updated Sep 30, 2024
  • primary Public

    Primary is a pipeline dedicated for all sequences to be processed for primary analysis.

    nexomis/primary’s past year of commit activity
    Nextflow 0 Apache-2.0 0 0 0 Updated Sep 28, 2024
  • nf-process Public

    Process as modules

    nexomis/nf-process’s past year of commit activity
    Nextflow 0 Apache-2.0 0 0 0 Updated Sep 27, 2024
  • nf-subworkflows Public

    subworkflows for nextflow

    nexomis/nf-subworkflows’s past year of commit activity
    Nextflow 0 Apache-2.0 0 0 0 Updated Sep 26, 2024
  • viral-assembly Public

    Assemble the viral genome and perform the associated quality control (QC). Start with raw reads and one pre-built reference database in standard format (see README.md).

    nexomis/viral-assembly’s past year of commit activity
    Nextflow 0 Apache-2.0 0 1 0 Updated Sep 26, 2024
  • tf_tk Public

    terrform toolkit

    nexomis/tf_tk’s past year of commit activity
    HCL 0 Apache-2.0 0 0 0 Updated Sep 24, 2024
  • viral-variant Public

    Calling variants (exhaustive - by position) with peptide impact and comparison between samples (via transfer annotation)

    nexomis/viral-variant’s past year of commit activity
    Nextflow 0 Apache-2.0 0 0 0 Updated Sep 20, 2024
  • ghcr-spades Public

    Docker image definition for the spades software

    nexomis/ghcr-spades’s past year of commit activity
    Dockerfile 0 0 0 0 Updated Sep 17, 2024
  • nf-config Public

    config files for nextflow

    nexomis/nf-config’s past year of commit activity
    Nextflow 0 Apache-2.0 0 0 0 Updated Sep 17, 2024
  • db-kraken2-custom Public

    Build kraken2 custom database

    nexomis/db-kraken2-custom’s past year of commit activity
    Shell 0 0 0 0 Updated Sep 16, 2024
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