Lineage query from path

[jorgee]

Support URI-like queries in fromPath factory

process ls {
        input:
                path('file')
        output:
                stdout
        script:
        """
        ls -l file
        """
}

workflow {
        paths = Channel.fromPath("lid:///?type=FileOutput&annotations.value=test")
        paths.view()
        ls(paths).view()

}

[netlify]

✅ Deploy Preview for nextflow-docs-staging canceled.

Name	Link
🔨 Latest commit	bf24f2f
🔍 Latest deploy log	https://app.netlify.com/sites/nextflow-docs-staging/deploys/6810bc163b9db9000975bf37

[pditommaso]

It looks like it throws this error when the annotation is missing/not matching

ERROR ~ Invalid LID file system path URI - make sure the schema prefix does not container more than two slash characters - offending value: lid:///?type=FileOutput&annotations.value=test

pr-29 16:49:42.276 [PathVisitor-1] ERROR nextflow.Channel - Property 'foo' doesn't exist in the lineage model.
java.lang.IllegalArgumentException: Property 'foo' doesn't exist in the lineage model.
	at nextflow.lineage.LinPropertyValidator.validate(LinPropertyValidator.groovy:69)
	at nextflow.lineage.LinPropertyValidator.validateQueryParams(LinPropertyValidator.groovy:76)
	at nextflow.lineage.LinUtils.parseQuery(LinUtils.groovy:195)
	at nextflow.lineage.DefaultLinStore.search(DefaultLinStore.groovy:99)
	at nextflow.lineage.fs.LinPath.resolveQuery(LinPath.groovy:530)
	at nextflow.file.PathVisitor.applyQueryablePath0(PathVisitor.groovy:119)
	at nextflow.file.PathVisitor.applyPathPattern0(PathVisitor.groovy:108)
	at nextflow.file.PathVisitor.apply(PathVisitor.groovy:69)
	at nextflow.file.PathVisitor$_applyAsync_closure1.doCall(PathVisitor.groovy:78)
	at nextflow.file.PathVisitor$_applyAsync_closure1.call(PathVisitor.groovy)
	at groovy.lang.Closure.run(Closure.java:505)
	at java.base/java.util.concurrent.CompletableFuture$UniRun.tryFire(CompletableFuture.java:787)
	at java.base/java.util.concurrent.CompletableFuture$Completion.run(CompletableFuture.java:482)
	at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1136)
	at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:635)
	at java.base/java.lang.Thread.run(Thread.java:840)