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@nextstrain

Nextstrain

Real-time tracking of pathogen evolution

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  1. ncov ncov Public

    Nextstrain build for SARS-CoV-2

    Python 1.4k 406

  2. augur augur Public

    Pipeline components for real-time phylodynamic analysis

    Python 268 130

  3. auspice auspice Public

    Web app for visualizing pathogen evolution

    JavaScript 299 165

Repositories

Showing 10 of 94 repositories
  • nextclade Public

    Viral genome alignment, mutation calling, clade assignment, quality checks and phylogenetic placement

    nextstrain/nextclade’s past year of commit activity
    Rust 225 MIT 60 109 (31 issues need help) 21 Updated Feb 24, 2025
  • rsv Public

    Workflow for RSV analyses on Nextstrain.org

    nextstrain/rsv’s past year of commit activity
    Python 6 3 7 3 Updated Feb 24, 2025
  • nextstrain.org Public

    The Nextstrain website

    nextstrain/nextstrain.org’s past year of commit activity
    JavaScript 94 AGPL-3.0 50 68 10 Updated Feb 24, 2025
  • zika Public

    Nextstrain build for Zika virus

    nextstrain/zika’s past year of commit activity
    Python 8 10 3 3 Updated Feb 24, 2025
  • WNV Public

    the repository used to build West Nile Virus for nextstrain

    nextstrain/WNV’s past year of commit activity
    Python 4 0 6 4 Updated Feb 24, 2025
  • avian-flu Public

    Nextstrain build for avian influenza viruses

    nextstrain/avian-flu’s past year of commit activity
    Python 24 10 13 9 Updated Feb 23, 2025
  • nextclade_data Public

    Datasets for https://github.com/nextstrain/nextclade

    nextstrain/nextclade_data’s past year of commit activity
    Python 33 27 8 14 Updated Feb 23, 2025
  • seasonal-flu Public

    Scripts. config, and snakefiles for seasonal-flu nextstrain builds

    nextstrain/seasonal-flu’s past year of commit activity
    Python 46 27 28 0 Updated Feb 21, 2025
  • fauna Public

    RethinkDB database to support real-time virus analysis

    nextstrain/fauna’s past year of commit activity
    Python 33 AGPL-3.0 13 19 10 Updated Feb 21, 2025
  • docker-base Public

    Docker image build for nextstrain/base

    nextstrain/docker-base’s past year of commit activity
    Shell 12 6 12 5 Updated Feb 20, 2025
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