Skip to content
@nextstrain

Nextstrain

Real-time tracking of pathogen evolution

Pinned Loading

  1. ncov ncov Public

    Nextstrain build for novel coronavirus SARS-CoV-2

    Python 1.4k 403

  2. augur augur Public

    Pipeline components for real-time phylodynamic analysis

    Python 268 129

  3. auspice auspice Public

    Web app for visualizing pathogen evolution

    JavaScript 292 163

Repositories

Showing 10 of 89 repositories
  • WNV Public

    the repository used to build West Nile Virus for nextstrain

    nextstrain/WNV’s past year of commit activity
    Python 2 0 1 0 Updated Sep 21, 2024
  • augur Public

    Pipeline components for real-time phylodynamic analysis

    nextstrain/augur’s past year of commit activity
    Python 268 AGPL-3.0 129 229 (1 issue needs help) 57 Updated Sep 20, 2024
  • seasonal-flu Public

    Scripts. config, and snakefiles for seasonal-flu nextstrain builds

    nextstrain/seasonal-flu’s past year of commit activity
    Python 44 26 25 4 Updated Sep 20, 2024
  • zika Public

    Nextstrain build for Zika virus

    nextstrain/zika’s past year of commit activity
    Python 8 10 5 1 Updated Sep 20, 2024
  • ncov Public

    Nextstrain build for novel coronavirus SARS-CoV-2

    nextstrain/ncov’s past year of commit activity
    Python 1,352 MIT 403 71 25 Updated Sep 20, 2024
  • fauna Public

    RethinkDB database to support real-time virus analysis

    nextstrain/fauna’s past year of commit activity
    Python 33 AGPL-3.0 13 18 9 Updated Sep 19, 2024
  • nextstrain.org Public

    The Nextstrain website

    nextstrain/nextstrain.org’s past year of commit activity
    JavaScript 87 AGPL-3.0 49 73 (2 issues need help) 10 Updated Sep 19, 2024
  • measles Public

    Nextstrain build for measles virus

    nextstrain/measles’s past year of commit activity
    Python 0 6 5 4 Updated Sep 19, 2024
  • avian-flu Public

    Nextstrain build for avian influenza viruses

    nextstrain/avian-flu’s past year of commit activity
    Python 19 7 9 2 Updated Sep 17, 2024
  • oropouche Public

    Oropouche Nextstrain build

    nextstrain/oropouche’s past year of commit activity
    Python 0 0 2 1 Updated Sep 16, 2024
View all repositories