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Nextstrain

Real-time tracking of pathogen evolution

203 followers
https://nextstrain.org
@nextstrain
@nextstrain@mstdn.science

Overview
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ncov ncov Public

Nextstrain build for SARS-CoV-2

Python 1.4k 406
augur augur Public

Pipeline components for real-time phylodynamic analysis

Python 272 136
auspice auspice Public

Web app for visualizing pathogen evolution

JavaScript 302 169

Repositories

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Showing 10 of 98 repositories

nextstrain.org Public
The Nextstrain website

nextstrain/nextstrain.org’s past year of commit activity

JavaScript 96 AGPL-3.0 52 76 12 Updated Sep 5, 2025
auspice Public
Web app for visualizing pathogen evolution

nextstrain/auspice’s past year of commit activity

JavaScript 302 AGPL-3.0 169 248 (4 issues need help) 36 Updated Sep 5, 2025
auspice.us Public

nextstrain/auspice.us’s past year of commit activity

JavaScript 13 8 4 1 Updated Sep 5, 2025
WNV Public
the repository used to build West Nile Virus for nextstrain

nextstrain/WNV’s past year of commit activity

Python 4 1 8 1 Updated Sep 4, 2025
augur Public
Pipeline components for real-time phylodynamic analysis

nextstrain/augur’s past year of commit activity

Python 272 AGPL-3.0 136 226 (1 issue needs help) 34 Updated Sep 4, 2025
docs.nextstrain.org Public
Umbrella documentation project for Nextstrain

nextstrain/docs.nextstrain.org’s past year of commit activity

Python 18 13 22 4 Updated Sep 4, 2025
nextclade Public
Viral genome alignment, mutation calling, clade assignment, quality checks and phylogenetic placement

nextstrain/nextclade’s past year of commit activity

Rust 243 MIT 65 114 (34 issues need help) 18 Updated Sep 4, 2025
nextclade_data Public
Datasets for https://github.com/nextstrain/nextclade

nextstrain/nextclade_data’s past year of commit activity

Python 38 35 9 19 Updated Sep 4, 2025
norovirus Public

nextstrain/norovirus’s past year of commit activity

Python 1 MIT 0 4 1 Updated Sep 3, 2025
ebola Public
Nextstrain build for Ebola virus

nextstrain/ebola’s past year of commit activity

Python 3 9 5 3 Updated Sep 3, 2025

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