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NCBI ingest: reduce manual curation of hosts #91

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joverlee521 opened this issue Aug 29, 2024 · 1 comment
Open

NCBI ingest: reduce manual curation of hosts #91

joverlee521 opened this issue Aug 29, 2024 · 1 comment
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enhancement New feature or request

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@joverlee521
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We currently manually curate a host_map.tsv for mapping specific host names to host groups (Avian, Nonhuman mammal, etc). We can probably reduce the manual curation of the host groupings by doing something similar to nextstrain/rabies#8.

It has not been too much overhead to curate and update this host map manually, so this could potentially wait on nextstrain/augur#1586.

@joverlee521 joverlee521 added the enhancement New feature or request label Aug 29, 2024
@jameshadfield
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(I'd vote to wait, although I did update it only yesterday! #89)

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