add resourceLimits directive to config

nf-core · Aug 28, 2024 · b5598b2 · b5598b2
1 parent 32b7186
commit b5598b2
Showing 1 changed file with 60 additions and 0 deletions.
diff --git a/conf/vsc_ugent.config b/conf/vsc_ugent.config
@@ -102,6 +102,11 @@ switch(cluster) {
         process {
             executor = 'slurm'
             queue = 'skitty'
+            resourceLimits = [
+                cpus: 36,
+                memory: 177.GB
+                time: 72.h
+            ]
         }
         break
     case "kirlia":
@@ -114,6 +119,11 @@ switch(cluster) {
         process {
             executor = 'slurm'
             queue = 'kirlia'
+            resourceLimits = [
+                cpus: 36,
+                memory: 738.GB
+                time: 72.h
+            ]
         }
         break
     case "doduo":
@@ -126,6 +136,11 @@ switch(cluster) {
         process {
             executor = 'slurm'
             queue = 'doduo'
+            resourceLimits = [
+                cpus: 96,
+                memory: 250.GB
+                time: 72.h
+            ]
         }
         break
     case "shinx":
@@ -138,6 +153,11 @@ switch(cluster) {
         process {
             executor = 'slurm'
             queue = 'shinx'
+            resourceLimits = [
+                cpus: 128,
+                memory: 256.GB
+                time: 72.h
+            ]
         }
         break
     case "cpu_rome":
@@ -151,6 +171,11 @@ switch(cluster) {
             executor = 'slurm'
             queue = 'dodrio/cpu_rome'
             clusterOptions = "-A ${tier1_project}"
+            resourceLimits = [
+                cpus: 128,
+                memory: 256.GB
+                time: 72.h
+            ]
         }
         break
     case "cpu_rome_512":
@@ -164,6 +189,11 @@ switch(cluster) {
             executor = 'slurm'
             queue = 'dodrio/cpu_rome_512'
             clusterOptions = "-A ${tier1_project}"
+            resourceLimits = [
+                cpus: 128,
+                memory: 256.GB
+                time: 72.h
+            ]
         }
         break
     case "cpu_milan":
@@ -177,6 +207,11 @@ switch(cluster) {
             executor = 'slurm'
             queue = 'dodrio/cpu_milan'
             clusterOptions = "-A ${tier1_project}"
+            resourceLimits = [
+                cpus: 128,
+                memory: 256.GB
+                time: 72.h
+            ]
         }
         break
     case "gpu_rome_a100_40":
@@ -190,6 +225,11 @@ switch(cluster) {
             executor = 'slurm'
             queue = 'dodrio/gpu_rome_a100_40'
             clusterOptions = "-A ${tier1_project}"
+            resourceLimits = [
+                cpus: 48,
+                memory: 256.GB
+                time: 72.h
+            ]
         }
         break
     case "gpu_rome_a100_80":
@@ -203,6 +243,11 @@ switch(cluster) {
             executor = 'slurm'
             queue = 'dodrio/gpu_rome_a100_80'
             clusterOptions = "-A ${tier1_project}"
+            resourceLimits = [
+                cpus: 48,
+                memory: 512.GB
+                time: 72.h
+            ]
         }
         break
     case "debug_rome":
@@ -216,6 +261,11 @@ switch(cluster) {
             executor = 'slurm'
             queue = 'dodrio/debug_rome'
             clusterOptions = "-A ${tier1_project}"
+            resourceLimits = [
+                cpus: 48,
+                memory: 256.GB
+                time: 72.h
+            ]
         }
         break
     case "cpu_rome_all":
@@ -229,6 +279,11 @@ switch(cluster) {
             executor = 'slurm'
             queue = 'dodrio/cpu_rome_all'
             clusterOptions = "-A ${tier1_project}"
+            resourceLimits = [
+                cpus: 128,
+                memory: 250.GB
+                time: 72.h
+            ]
         }
         break
     case "gpu_rome_a100":
@@ -242,6 +297,11 @@ switch(cluster) {
             executor = 'slurm'
             queue = 'dodrio/gpu_rome_a100'
             clusterOptions = "-A ${tier1_project}"
+            resourceLimits = [
+                cpus: 48,
+                memory: 384.GB
+                time: 72.h
+            ]
         }
         break
 }