Update nextflow.config to load custom pipeline configs

nf-core · Apr 12, 2024 · 41d20ce · 41d20ce
1 parent 6e1125d
commit 41d20ce
Showing 1 changed file with 6 additions and 6 deletions.
diff --git a/nextflow.config b/nextflow.config
@@ -165,12 +165,12 @@ try {
     System.err.println("WARNING: Could not load nf-core/config profiles: ${params.custom_config_base}/nfcore_custom.config")
 }
 
-// // Load nf-core/cutandrun custom config
-// try {
-//     includeConfig "${params.custom_config_base}/pipeline/cutandrun.config"
-// } catch (Exception e) {
-//     System.err.println("WARNING: Could not load nf-core/config/cutandrun profiles: ${params.custom_config_base}/pipeline/cutandrun.config")
-// }
+// Load nf-core/cutandrun custom config
+try {
+    includeConfig "${params.custom_config_base}/pipeline/cutandrun.config"
+} catch (Exception e) {
+    System.err.println("WARNING: Could not load nf-core/config/cutandrun profiles: ${params.custom_config_base}/pipeline/cutandrun.config")
+}
 
 profiles {
     debug {