Add outdir parameter to ci command

nf-core · Oct 21, 2024 · 8b02ba3 · 8b02ba3
1 parent 8df9314
commit 8b02ba3
Showing 1 changed file with 2 additions and 2 deletions.
diff --git a/.github/workflows/ci_nextflow.yml b/.github/workflows/ci_nextflow.yml
@@ -39,7 +39,7 @@ jobs:
         uses: jlumbroso/free-disk-space@54081f138730dfa15788a46383842cd2f914a1be # v1.3.1
 
       - name: Run pipeline with test data
-        # TODO: Get rid of loca profile when the nf-core like configs are in
+        # TODO: Get rid of local profile when the nf-core like configs are in
         run: |
           nextflow run ${GITHUB_WORKSPACE} -profile test,docker
 
@@ -57,4 +57,4 @@ jobs:
           sudo mv nextflow /usr/local/bin/
       - name: Run pipeline with stub-run in alphafold2 split mode
         run: |
-          nextflow run ${GITHUB_WORKSPACE} -profile test_stub,docker
+          nextflow run ${GITHUB_WORKSPACE} -profile test_stub,docker --oudir results