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318 update some modeles for tes compliance #1018

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318 update some modeles for tes compliance

318 update some modeles for tes compliance #1018

Triggered via pull request September 16, 2024 03:32
@vsmalladivsmalladi
synchronize #319
318-update-some-modeles-for-tes-compliance
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67 errors and 59 warnings
nf.Parameters: --skip_fastq_download: nf#L1
Assertion failed: 1 of 3 assertions failed
Test process: MULTIQC_MAPPINGS_CONFIG.Should run without failures: Test process: MULTIQC_MAPPINGS_CONFIG#L1
Assertion failed: 1 of 2 assertions failed
nf.Parameters: default: nf#L1
Assertion failed: 1 of 3 assertions failed
workflows/sra/tests/sra_skip_fastq_download.nf.test docker NF-23.04
Process completed with exit code 1.
workflows/sra/tests/sra_skip_fastq_download.nf.test docker NF-23.04
Process completed with exit code 1.
nf.Parameters: --nf_core_pipeline taxprofiler: nf#L1
Assertion failed: 1 of 3 assertions failed
workflows/sra/tests/main.nf.test docker NF-23.04
Process completed with exit code 1.
workflows/sra/tests/main.nf.test docker NF-23.04
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workflows/sra/tests/sra_nf_core_pipeline_taxprofiler.nf.test docker NF-23.04
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workflows/sra/tests/sra_nf_core_pipeline_taxprofiler.nf.test docker NF-23.04
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modules/local/multiqc_mappings_config/tests/main.nf.test docker NF-23.04
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modules/local/multiqc_mappings_config/tests/main.nf.test docker NF-23.04
Process completed with exit code 1.
nf.Parameters: --nf_core_pipeline rnaseq: nf#L1
Assertion failed: 1 of 3 assertions failed
Test process: MULTIQC_MAPPINGS_CONFIG.Should run without failures: Test process: MULTIQC_MAPPINGS_CONFIG#L1
Assertion failed: 1 of 2 assertions failed
workflows/sra/tests/sra_nf_core_pipeline_rnaseq.nf.test docker NF-23.04
Process completed with exit code 1.
workflows/sra/tests/sra_nf_core_pipeline_rnaseq.nf.test docker NF-23.04
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nf.Parameters: --nf_core_pipeline rnaseq --ena_metadata_fields ... --sample_mapping_fields ...: nf#L1
Assertion failed: 1 of 3 assertions failed
modules/local/multiqc_mappings_config/tests/main.nf.test docker NF-latest-everything
Process completed with exit code 1.
modules/local/multiqc_mappings_config/tests/main.nf.test docker NF-latest-everything
Process completed with exit code 1.
workflows/sra/tests/sra_custom_ena_metadata_fields.nf.test docker NF-23.04
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workflows/sra/tests/sra_custom_ena_metadata_fields.nf.test docker NF-23.04
Process completed with exit code 1.
nf.Parameters: --nf_core_pipeline viralrecon: nf#L1
Assertion failed: 1 of 3 assertions failed
workflows/sra/tests/sra_nf_core_pipeline_viralrecon.nf.test docker NF-23.04
Process completed with exit code 1.
workflows/sra/tests/sra_nf_core_pipeline_viralrecon.nf.test docker NF-23.04
Process completed with exit code 1.
nf.Parameters: --download_method sratools: nf#L1
Assertion failed: 1 of 3 assertions failed
nf.Parameters: --download_method aspera: nf#L1
Assertion failed: 1 of 3 assertions failed
workflows/sra/tests/sra_download_method_sratools.nf.test docker NF-23.04
Process completed with exit code 1.
workflows/sra/tests/sra_download_method_sratools.nf.test docker NF-23.04
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workflows/sra/tests/sra_download_method_aspera.nf.test docker NF-23.04
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workflows/sra/tests/sra_download_method_aspera.nf.test docker NF-23.04
Process completed with exit code 1.
nf.Parameters: --nf_core_pipeline taxprofiler: nf#L1
Assertion failed: 1 of 3 assertions failed
workflows/sra/tests/sra_nf_core_pipeline_taxprofiler.nf.test docker NF-latest-everything
Process completed with exit code 1.
workflows/sra/tests/sra_nf_core_pipeline_taxprofiler.nf.test docker NF-latest-everything
Process completed with exit code 1.
nf.Parameters: --skip_fastq_download: nf#L1
Assertion failed: 1 of 3 assertions failed
workflows/sra/tests/sra_skip_fastq_download.nf.test docker NF-latest-everything
Process completed with exit code 1.
workflows/sra/tests/sra_skip_fastq_download.nf.test docker NF-latest-everything
Process completed with exit code 1.
nf.Parameters: --nf_core_pipeline rnaseq: nf#L1
Assertion failed: 1 of 3 assertions failed
nf.Parameters: --nf_core_pipeline viralrecon: nf#L1
Assertion failed: 1 of 3 assertions failed
nf.Parameters: --nf_core_pipeline atacseq: nf#L1
Assertion failed: 1 of 3 assertions failed
workflows/sra/tests/sra_nf_core_pipeline_rnaseq.nf.test docker NF-latest-everything
Process completed with exit code 1.
workflows/sra/tests/sra_nf_core_pipeline_rnaseq.nf.test docker NF-latest-everything
Process completed with exit code 1.
nf.Parameters: --nf_core_pipeline atacseq: nf#L1
Assertion failed: 1 of 3 assertions failed
nf.Parameters: --nf_core_pipeline rnaseq --ena_metadata_fields ... --sample_mapping_fields ...: nf#L1
Assertion failed: 1 of 3 assertions failed
workflows/sra/tests/sra_nf_core_pipeline_viralrecon.nf.test docker NF-latest-everything
Process completed with exit code 1.
workflows/sra/tests/sra_nf_core_pipeline_viralrecon.nf.test docker NF-latest-everything
Process completed with exit code 1.
workflows/sra/tests/sra_nf_core_pipeline_atacseq.nf.test docker NF-latest-everything
Process completed with exit code 1.
workflows/sra/tests/sra_nf_core_pipeline_atacseq.nf.test docker NF-latest-everything
Process completed with exit code 1.
nf.Parameters: default: nf#L1
Assertion failed: 1 of 3 assertions failed
workflows/sra/tests/sra_nf_core_pipeline_atacseq.nf.test docker NF-23.04
Process completed with exit code 1.
workflows/sra/tests/sra_nf_core_pipeline_atacseq.nf.test docker NF-23.04
Process completed with exit code 1.
workflows/sra/tests/sra_custom_ena_metadata_fields.nf.test docker NF-latest-everything
Process completed with exit code 1.
workflows/sra/tests/sra_custom_ena_metadata_fields.nf.test docker NF-latest-everything
Process completed with exit code 1.
workflows/sra/tests/main.nf.test docker NF-latest-everything
Process completed with exit code 1.
workflows/sra/tests/main.nf.test docker NF-latest-everything
Process completed with exit code 1.
Test Process SRATOOLS_FASTERQDUMP.Single-end: Test Process SRATOOLS_FASTERQDUMP#L1
Assertion failed: 1 of 2 assertions failed
modules/nf-core/sratools/fasterqdump/tests/main.nf.test docker NF-23.04
Process completed with exit code 1.
modules/nf-core/sratools/fasterqdump/tests/main.nf.test docker NF-23.04
Process completed with exit code 1.
Test Process SRATOOLS_FASTERQDUMP.Single-end: Test Process SRATOOLS_FASTERQDUMP#L1
Assertion failed: 1 of 2 assertions failed
modules/nf-core/sratools/fasterqdump/tests/main.nf.test docker NF-latest-everything
Process completed with exit code 1.
modules/nf-core/sratools/fasterqdump/tests/main.nf.test docker NF-latest-everything
Process completed with exit code 1.
nf.Parameters: --download_method aspera: nf#L1
Assertion failed: 1 of 3 assertions failed
workflows/sra/tests/sra_download_method_aspera.nf.test docker NF-latest-everything
Process completed with exit code 1.
workflows/sra/tests/sra_download_method_aspera.nf.test docker NF-latest-everything
Process completed with exit code 1.
nf.Parameters: --download_method sratools: nf#L1
Assertion failed: 1 of 3 assertions failed
workflows/sra/tests/sra_download_method_sratools.nf.test docker NF-latest-everything
Process completed with exit code 1.
workflows/sra/tests/sra_download_method_sratools.nf.test docker NF-latest-everything
Process completed with exit code 1.
confirm-pass
Process completed with exit code 1.
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modules/local/sra_to_samplesheet/tests/main.nf.test docker NF-23.04
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subworkflows/local/utils_nfcore_fetchngs_pipeline/tests/main.workflow_pipeline_completion.nf.test docker NF-latest-everything
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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modules/local/sra_fastq_ftp/tests/main.nf.test docker NF-latest-everything
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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modules/local/sra_ids_to_runinfo/tests/main.nf.test docker NF-23.04
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
modules/local/sra_runinfo_to_ftp/tests/main.nf.test docker NF-latest-everything
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
subworkflows/local/utils_nfcore_fetchngs_pipeline/tests/main.workflow_pipeline_initialisation.nf.test docker NF-latest-everything
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
subworkflows/local/utils_nfcore_fetchngs_pipeline/tests/main.workflow_pipeline_initialisation.nf.test docker NF-23.04
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
modules/local/sra_runinfo_to_ftp/tests/main.nf.test docker NF-23.04
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
subworkflows/local/utils_nfcore_fetchngs_pipeline/tests/main.workflow_pipeline_completion.nf.test docker NF-23.04
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
modules/local/sra_fastq_ftp/tests/main.nf.test docker NF-23.04
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
modules/nf-core/custom/sratoolsncbisettings/tests/main.nf.test docker NF-latest-everything
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
workflows/sra/tests/sra_skip_fastq_download.nf.test docker NF-23.04
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
subworkflows/nf-core/utils_nextflow_pipeline/tests/main.workflow.nf.test docker NF-latest-everything
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modules/nf-core/custom/sratoolsncbisettings/tests/main.nf.test docker NF-23.04
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
workflows/sra/tests/main.nf.test docker NF-23.04
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
modules/local/aspera_cli/tests/main.nf.test docker NF-23.04
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The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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modules/local/multiqc_mappings_config/tests/main.nf.test docker NF-23.04
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
subworkflows/nf-core/utils_nfvalidation_plugin/tests/main.nf.test docker NF-latest-everything
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
subworkflows/nf-core/utils_nextflow_pipeline/tests/main.function.nf.test docker NF-latest-everything
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
subworkflows/nf-core/utils_nextflow_pipeline/tests/main.workflow.nf.test docker NF-23.04
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
modules/nf-core/untar/tests/main.nf.test docker NF-23.04
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
workflows/sra/tests/sra_nf_core_pipeline_taxprofiler.nf.test docker NF-latest-everything
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
workflows/sra/tests/sra_skip_fastq_download.nf.test docker NF-latest-everything
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
modules/nf-core/sratools/prefetch/tests/main.nf.test docker NF-latest-everything
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
workflows/sra/tests/sra_nf_core_pipeline_rnaseq.nf.test docker NF-latest-everything
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
subworkflows/nf-core/fastq_download_prefetch_fasterqdump_sratools/tests/main.nf.test docker NF-latest-everything
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
workflows/sra/tests/sra_nf_core_pipeline_viralrecon.nf.test docker NF-latest-everything
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
workflows/sra/tests/sra_nf_core_pipeline_atacseq.nf.test docker NF-latest-everything
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
workflows/sra/tests/sra_nf_core_pipeline_atacseq.nf.test docker NF-23.04
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
workflows/sra/tests/sra_custom_ena_metadata_fields.nf.test docker NF-latest-everything
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
workflows/sra/tests/main.nf.test docker NF-latest-everything
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
modules/local/sra_to_samplesheet/tests/main.nf.test docker NF-latest-everything
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
modules/nf-core/sratools/fasterqdump/tests/main.nf.test docker NF-23.04
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
modules/nf-core/sratools/fasterqdump/tests/main.nf.test docker NF-latest-everything
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
workflows/sra/tests/sra_download_method_aspera.nf.test docker NF-latest-everything
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
workflows/sra/tests/sra_download_method_sratools.nf.test docker NF-latest-everything
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
tests/main.nf.test docker NF-23.04
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
tests/main.nf.test docker NF-latest-everything
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/