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Add ampliseq samplesheet creation dependent on #790 in ampliseq #1046

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Add ampliseq samplesheet creation dependent on #790 in ampliseq

Add ampliseq samplesheet creation dependent on #790 in ampliseq #1046

Triggered via pull request October 29, 2024 10:13
@jenmuelljenmuell
opened #324
jenmuell:add_ampliseq_samplesheet_creation
Status Failure
Total duration 7m 48s
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ci.yml

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29 errors and 49 warnings
modules/local/sra_to_samplesheet/tests/main.nf.test | 24.04.2 | docker
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
workflows/sra/tests/sra_skip_fastq_download.nf.test | latest-everything | docker
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
workflows/sra/tests/sra_nf_core_pipeline_atacseq.nf.test | latest-everything | docker
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
workflows/sra/tests/sra_custom_ena_metadata_fields.nf.test | latest-everything | docker
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
workflows/sra/tests/sra_nf_core_pipeline_taxprofiler.nf.test | 24.04.2 | docker
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
workflows/sra/tests/sra_nf_core_pipeline_atacseq.nf.test | 24.04.2 | docker
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
workflows/sra/tests/sra_skip_fastq_download.nf.test | 24.04.2 | docker
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
workflows/sra/tests/sra_download_method_sratools.nf.test | latest-everything | docker
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
workflows/sra/tests/sra_nf_core_pipeline_viralrecon.nf.test | 24.04.2 | docker
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
workflows/sra/tests/sra_nf_core_pipeline_viralrecon.nf.test | latest-everything | docker
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
workflows/sra/tests/sra_nf_core_pipeline_rnaseq.nf.test | 24.04.2 | docker
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
workflows/sra/tests/sra_nf_core_pipeline_taxprofiler.nf.test | latest-everything | docker
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
workflows/sra/tests/sra_nf_core_pipeline_ampliseq.nf.test | 24.04.2 | docker
Process completed with exit code 1.
workflows/sra/tests/sra_nf_core_pipeline_ampliseq.nf.test | 24.04.2 | docker
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
workflows/sra/tests/sra_nf_core_pipeline_ampliseq.nf.test | 24.04.2 | docker
Process completed with exit code 1.
workflows/sra/tests/sra_download_method_aspera.nf.test | latest-everything | docker
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
workflows/sra/tests/sra_download_method_sratools.nf.test | 24.04.2 | docker
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
workflows/sra/tests/sra_nf_core_pipeline_rnaseq.nf.test | latest-everything | docker
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
modules/local/sra_to_samplesheet/tests/main.nf.test | latest-everything | docker
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
workflows/sra/tests/sra_custom_ena_metadata_fields.nf.test | 24.04.2 | docker
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
workflows/sra/tests/main.nf.test | 24.04.2 | docker
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
workflows/sra/tests/sra_download_method_aspera.nf.test | 24.04.2 | docker
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
workflows/sra/tests/sra_nf_core_pipeline_ampliseq.nf.test | latest-everything | docker
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
workflows/sra/tests/sra_nf_core_pipeline_ampliseq.nf.test | latest-everything | docker
Process completed with exit code 1.
workflows/sra/tests/sra_nf_core_pipeline_ampliseq.nf.test | latest-everything | docker
Process completed with exit code 1.
workflows/sra/tests/main.nf.test | latest-everything | docker
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
tests/main.nf.test | 24.04.2 | docker
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
tests/main.nf.test | latest-everything | docker
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
confirm-pass
Process completed with exit code 1.
Check for changes
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/checkout@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
modules/local/sra_to_samplesheet/tests/main.nf.test | 24.04.2 | docker
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
modules/local/sra_to_samplesheet/tests/main.nf.test | 24.04.2 | docker
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
workflows/sra/tests/sra_skip_fastq_download.nf.test | latest-everything | docker
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
workflows/sra/tests/sra_skip_fastq_download.nf.test | latest-everything | docker
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
workflows/sra/tests/sra_nf_core_pipeline_atacseq.nf.test | latest-everything | docker
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
workflows/sra/tests/sra_nf_core_pipeline_atacseq.nf.test | latest-everything | docker
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
workflows/sra/tests/sra_custom_ena_metadata_fields.nf.test | latest-everything | docker
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
workflows/sra/tests/sra_custom_ena_metadata_fields.nf.test | latest-everything | docker
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
workflows/sra/tests/sra_nf_core_pipeline_taxprofiler.nf.test | 24.04.2 | docker
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
workflows/sra/tests/sra_nf_core_pipeline_taxprofiler.nf.test | 24.04.2 | docker
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
workflows/sra/tests/sra_nf_core_pipeline_atacseq.nf.test | 24.04.2 | docker
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
workflows/sra/tests/sra_nf_core_pipeline_atacseq.nf.test | 24.04.2 | docker
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
workflows/sra/tests/sra_skip_fastq_download.nf.test | 24.04.2 | docker
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
workflows/sra/tests/sra_skip_fastq_download.nf.test | 24.04.2 | docker
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
workflows/sra/tests/sra_download_method_sratools.nf.test | latest-everything | docker
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
workflows/sra/tests/sra_download_method_sratools.nf.test | latest-everything | docker
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
workflows/sra/tests/sra_nf_core_pipeline_viralrecon.nf.test | 24.04.2 | docker
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
workflows/sra/tests/sra_nf_core_pipeline_viralrecon.nf.test | 24.04.2 | docker
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
workflows/sra/tests/sra_nf_core_pipeline_viralrecon.nf.test | latest-everything | docker
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
workflows/sra/tests/sra_nf_core_pipeline_viralrecon.nf.test | latest-everything | docker
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
workflows/sra/tests/sra_nf_core_pipeline_rnaseq.nf.test | 24.04.2 | docker
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
workflows/sra/tests/sra_nf_core_pipeline_rnaseq.nf.test | 24.04.2 | docker
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
workflows/sra/tests/sra_nf_core_pipeline_taxprofiler.nf.test | latest-everything | docker
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
workflows/sra/tests/sra_nf_core_pipeline_taxprofiler.nf.test | latest-everything | docker
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
workflows/sra/tests/sra_nf_core_pipeline_ampliseq.nf.test | 24.04.2 | docker
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
workflows/sra/tests/sra_nf_core_pipeline_ampliseq.nf.test | 24.04.2 | docker
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
workflows/sra/tests/sra_download_method_aspera.nf.test | latest-everything | docker
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
workflows/sra/tests/sra_download_method_aspera.nf.test | latest-everything | docker
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
workflows/sra/tests/sra_download_method_sratools.nf.test | 24.04.2 | docker
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
workflows/sra/tests/sra_download_method_sratools.nf.test | 24.04.2 | docker
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
workflows/sra/tests/sra_nf_core_pipeline_rnaseq.nf.test | latest-everything | docker
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
workflows/sra/tests/sra_nf_core_pipeline_rnaseq.nf.test | latest-everything | docker
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
modules/local/sra_to_samplesheet/tests/main.nf.test | latest-everything | docker
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
modules/local/sra_to_samplesheet/tests/main.nf.test | latest-everything | docker
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
workflows/sra/tests/sra_custom_ena_metadata_fields.nf.test | 24.04.2 | docker
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
workflows/sra/tests/sra_custom_ena_metadata_fields.nf.test | 24.04.2 | docker
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
workflows/sra/tests/main.nf.test | 24.04.2 | docker
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
workflows/sra/tests/main.nf.test | 24.04.2 | docker
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
workflows/sra/tests/sra_download_method_aspera.nf.test | 24.04.2 | docker
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
workflows/sra/tests/sra_download_method_aspera.nf.test | 24.04.2 | docker
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
workflows/sra/tests/sra_nf_core_pipeline_ampliseq.nf.test | latest-everything | docker
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
workflows/sra/tests/sra_nf_core_pipeline_ampliseq.nf.test | latest-everything | docker
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
workflows/sra/tests/main.nf.test | latest-everything | docker
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
workflows/sra/tests/main.nf.test | latest-everything | docker
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
tests/main.nf.test | 24.04.2 | docker
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
tests/main.nf.test | 24.04.2 | docker
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
tests/main.nf.test | latest-everything | docker
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
tests/main.nf.test | latest-everything | docker
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23