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modules.json
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modules.json
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{
"name": "nf-core/funcscan",
"homePage": "https://github.com/nf-core/funcscan",
"repos": {
"https://github.com/nf-core/modules.git": {
"modules": {
"nf-core": {
"abricate/run": {
"branch": "master",
"git_sha": "9837ac7d7bb2e2362c021e8dc08efa96190b49a4",
"installed_by": ["modules"]
},
"ampcombi2/cluster": {
"branch": "master",
"git_sha": "900f6c970712e41b783e21e5dfc30f052174b5cd",
"installed_by": ["modules"]
},
"ampcombi2/complete": {
"branch": "master",
"git_sha": "900f6c970712e41b783e21e5dfc30f052174b5cd",
"installed_by": ["modules"]
},
"ampcombi2/parsetables": {
"branch": "master",
"git_sha": "900f6c970712e41b783e21e5dfc30f052174b5cd",
"installed_by": ["modules"]
},
"ampir": {
"branch": "master",
"git_sha": "9bfc81874554e87740bcb3e5e07acf0a153c9ecb",
"installed_by": ["modules"]
},
"amplify/predict": {
"branch": "master",
"git_sha": "730f3aee80d5f8d0b5fc532202ac59361414d006",
"installed_by": ["modules"]
},
"amrfinderplus/run": {
"branch": "master",
"git_sha": "c0514dfc403fa97c96f549de6abe99f03c78fe8d",
"installed_by": ["modules"]
},
"amrfinderplus/update": {
"branch": "master",
"git_sha": "8f4a5d5ad55715f6c905ab73ce49f677cf6092fc",
"installed_by": ["modules"]
},
"antismash/antismashlite": {
"branch": "master",
"git_sha": "b20be35facfc5acdc1259f132ed79339d79e989f",
"installed_by": ["modules"]
},
"antismash/antismashlitedownloaddatabases": {
"branch": "master",
"git_sha": "4e5f4687318f24ba944a13609d3ea6ebd890737d",
"installed_by": ["modules"]
},
"argnorm": {
"branch": "master",
"git_sha": "e4fc46af5ec30070e6aef780aba14f89a28caa88",
"installed_by": ["modules"]
},
"bakta/bakta": {
"branch": "master",
"git_sha": "52507581f62929f98dd6e6c5c5824583fa6ef94d",
"installed_by": ["modules"]
},
"bakta/baktadbdownload": {
"branch": "master",
"git_sha": "7c06e6820fa3918bc28a040e794f8a2b39fabadb",
"installed_by": ["modules"]
},
"deeparg/downloaddata": {
"branch": "master",
"git_sha": "0af92e0fe6a34f31ee41eae66f04d71850fb4beb",
"installed_by": ["modules"]
},
"deeparg/predict": {
"branch": "master",
"git_sha": "90b63cde0f838ca4da3a88a37a5309888cae97b9",
"installed_by": ["modules"]
},
"deepbgc/download": {
"branch": "master",
"git_sha": "f315f85d9ac6c321f6e3596493fd61019340df2a",
"installed_by": ["modules"]
},
"deepbgc/pipeline": {
"branch": "master",
"git_sha": "34ac993e081b32d2170ab790d0386b74122f9d36",
"installed_by": ["modules"]
},
"fargene": {
"branch": "master",
"git_sha": "5e8481d994963871e3faf061d6fbf02fe33d8cad",
"installed_by": ["modules"]
},
"gecco/run": {
"branch": "master",
"git_sha": "f9707f9499a90a46208873d23440e22ac8ad5ebc",
"installed_by": ["modules"]
},
"gunzip": {
"branch": "master",
"git_sha": "4e5f4687318f24ba944a13609d3ea6ebd890737d",
"installed_by": ["modules"]
},
"hamronization/abricate": {
"branch": "master",
"git_sha": "9837ac7d7bb2e2362c021e8dc08efa96190b49a4",
"installed_by": ["modules"]
},
"hamronization/amrfinderplus": {
"branch": "master",
"git_sha": "52ddbb3ad754d870e485bcfcb680fe6a49d83567",
"installed_by": ["modules"]
},
"hamronization/deeparg": {
"branch": "master",
"git_sha": "9837ac7d7bb2e2362c021e8dc08efa96190b49a4",
"installed_by": ["modules"]
},
"hamronization/fargene": {
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"git_sha": "9cf6f5e4ad9cc11a670a94d56021f1c4f9a91ec1",
"installed_by": ["modules"]
},
"hamronization/rgi": {
"branch": "master",
"git_sha": "483e4838a2a009e826ea14da0dfc6bcaccef5ad1",
"installed_by": ["modules"]
},
"hamronization/summarize": {
"branch": "master",
"git_sha": "9837ac7d7bb2e2362c021e8dc08efa96190b49a4",
"installed_by": ["modules"]
},
"hmmer/hmmsearch": {
"branch": "master",
"git_sha": "b046a286c8240ebe3412ddf8ae901d47008d1ca7",
"installed_by": ["modules"]
},
"macrel/contigs": {
"branch": "master",
"git_sha": "3f5420aa22e00bd030a2556dfdffc9e164ec0ec5",
"installed_by": ["modules"]
},
"mmseqs/createdb": {
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"installed_by": ["modules"]
},
"mmseqs/createtsv": {
"branch": "master",
"git_sha": "89fe39b745da3dca14ad1a361784812ea3aa3a43",
"installed_by": ["modules"]
},
"mmseqs/databases": {
"branch": "master",
"git_sha": "151460db852d636979d9ff3ee631e2268060d4c3",
"installed_by": ["modules"]
},
"mmseqs/taxonomy": {
"branch": "master",
"git_sha": "89fe39b745da3dca14ad1a361784812ea3aa3a43",
"installed_by": ["modules"]
},
"multiqc": {
"branch": "master",
"git_sha": "878d2adbb911aa6e15c06a4d1e93d01bd6f26c74",
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},
"prodigal": {
"branch": "master",
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"installed_by": ["modules"]
},
"prokka": {
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"git_sha": "697d97d46d56b12ff46a1a848a36849527cea0b8",
"installed_by": ["modules"]
},
"pyrodigal": {
"branch": "master",
"git_sha": "c00055a0b13d622b4f1f51a8e5be31deaf99ded7",
"installed_by": ["modules"]
},
"rgi/cardannotation": {
"branch": "master",
"git_sha": "dbbb0c509e044d2680b429ba622049d4a23426dc",
"installed_by": ["modules"]
},
"rgi/main": {
"branch": "master",
"git_sha": "4e5f4687318f24ba944a13609d3ea6ebd890737d",
"installed_by": ["modules"]
},
"seqkit/seq": {
"branch": "master",
"git_sha": "03fbf6c89e551bd8d77f3b751fb5c955f75b34c5",
"installed_by": ["modules"]
},
"tabix/bgzip": {
"branch": "master",
"git_sha": "b20be35facfc5acdc1259f132ed79339d79e989f",
"installed_by": ["modules"]
},
"untar": {
"branch": "master",
"git_sha": "4e5f4687318f24ba944a13609d3ea6ebd890737d",
"installed_by": ["modules"],
"patch": "modules/nf-core/untar/untar.diff"
}
}
},
"subworkflows": {
"nf-core": {
"utils_nextflow_pipeline": {
"branch": "master",
"git_sha": "5caf7640a9ef1d18d765d55339be751bb0969dfa",
"installed_by": ["subworkflows"]
},
"utils_nfcore_pipeline": {
"branch": "master",
"git_sha": "92de218a329bfc9a9033116eb5f65fd270e72ba3",
"installed_by": ["subworkflows"]
},
"utils_nfvalidation_plugin": {
"branch": "master",
"git_sha": "5caf7640a9ef1d18d765d55339be751bb0969dfa",
"installed_by": ["subworkflows"]
}
}
}
}
}
}