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17 Open 143 Closed
17 Open 143 Closed
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Issues list

AMPCOMBI/PASRSETABLE default resources very underpowered bug Something isn't working
#451 opened Feb 6, 2025 by jfy133
5
Enable GECCO optional features for integration with other tools enhancement Improvement for existing functionality
#450 opened Feb 4, 2025 by amizeranschi
3
AA sequences ending with * have missing values for molecular_weight and hydrophobicity columns and inconsistent values on the CDS_stop_codon_found column in Ampcombi_summary.tsv bug Something isn't working
#449 opened Feb 2, 2025 by amizeranschi
4
AMP screening doesn't run when only a single tool is enabled bug Something isn't working
#444 opened Jan 28, 2025 by amizeranschi
1
3
How to speed up MMseqs2 taxonomy assignment with GTDB database on large contigs? question Further information is requested
#424 opened Oct 18, 2024 by lucianhu
1
nf-test wishlist enhancement Improvement for existing functionality
#398 opened Jul 8, 2024 by jasmezz
5 tasks
2.1 - Egyptian Koshari
Consider allowing annotation to run even if downstream screening not run enhancement Improvement for existing functionality
#392 opened Jul 3, 2024 by jfy133
1
A uniform input for all tools in each screening workflow enhancement Improvement for existing functionality
#385 opened Jun 5, 2024 by m3hdad
2
improving tool documentation & adding tests enhancement Improvement for existing functionality
#383 opened Jun 4, 2024 by ewissel
1
AMPLIFY_PREDICT exits with a ValueError while checking input bug Something isn't working
#373 opened May 5, 2024 by m3hdad
2
Add BAKTA results to MultiQC enhancement Improvement for existing functionality
#339 opened Feb 14, 2024 by jfy133
Add module: resfinder enhancement Improvement for existing functionality
#330 opened Jan 23, 2024 by jasmezz
Adapt deepBGC to use GPUs enhancement Improvement for existing functionality
#326 opened Dec 19, 2023 by Darcy220606
4
Add pharokka to nf-core/funcscan feature-request Request for a new pipeline feature
#329 opened Dec 15, 2023 by CarsonJM
@CarsonJM
Benchmarking tests showing resource values are suboptimal bug Something isn't working low-priority
#292 opened Jul 5, 2023 by jfy133
Consider adding annotation tools to MultiQC report enhancement Improvement for existing functionality
#277 opened May 24, 2023 by jfy133
@louperelo
Consider passing the annotation tool output to modules input for more standardization
#179 opened Dec 21, 2022 by Darcy220606
4 tasks
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