chore: merge pull request #8 from nf-core/dev

v1.0.3
nf-core · Jul 18, 2023 · b02ede7 · b02ede7
2 parents 87ea6e2 + b4aa5e8
commit b02ede7
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Showing 6 changed files with 18 additions and 11 deletions.
diff --git a/.github/workflows/awsfulltest.yml b/.github/workflows/awsfulltest.yml
@@ -24,8 +24,7 @@ jobs:
           parameters: |
             {
               "hook_url": "${{ secrets.MEGATESTS_ALERTS_SLACK_HOOK_URL }}",
-              "outdir": "s3://${{ secrets.AWS_S3_BUCKET }}/marsseq/results-${{ github.sha }}"
-              "outdir": "s3://${{ secrets.AWS_S3_BUCKET }}/marsseq/results-test-${{ github.sha }}",
+              "outdir": "s3://${{ secrets.AWS_S3_BUCKET }}/marsseq/results-${{ github.sha }}",
               "build_references": true,
               "velocity": true
             }
@@ -36,16 +35,18 @@ jobs:
           path: tower_action_*.log
 
       - name: Launch execution workflow via tower
-        uses: seqeralabs/action-tower-launch@v1
+        uses: seqeralabs/action-tower-launch@v2
         with:
           workspace_id: ${{ secrets.TOWER_WORKSPACE_ID }}
           access_token: ${{ secrets.TOWER_ACCESS_TOKEN }}
           compute_env: ${{ secrets.TOWER_COMPUTE_ENV }}
+          revision: ${{ github.sha }}
           workdir: s3://${{ secrets.AWS_S3_BUCKET }}/work/marsseq/work-${{ github.sha }}
           parameters: |
             {
-              "outdir": "s3://${{ secrets.AWS_S3_BUCKET }}/marsseq/results-test-${{ github.sha }}",
-              "genomes_base": "s3://${{ secrets.AWS_S3_BUCKET }}/marsseq/results-test-${{ github.sha }}/references",
+              "hook_url": "${{ secrets.MEGATESTS_ALERTS_SLACK_HOOK_URL }}",
+              "genomes_base": "s3://${{ secrets.AWS_S3_BUCKET }}/marsseq/results-${{ github.sha }}/references",
+              "outdir": "s3://${{ secrets.AWS_S3_BUCKET }}/marsseq/results-${{ github.sha }}",
               "velocity": true
             }
           profiles: test_full

diff --git a/.github/workflows/awstest.yml b/.github/workflows/awstest.yml
@@ -32,16 +32,16 @@ jobs:
           path: tower_action_*.log
 
       - name: Launch execution workflow via tower
-        uses: seqeralabs/action-tower-launch@v1
+        uses: seqeralabs/action-tower-launch@v2
         with:
           workspace_id: ${{ secrets.TOWER_WORKSPACE_ID }}
           access_token: ${{ secrets.TOWER_ACCESS_TOKEN }}
           compute_env: ${{ secrets.TOWER_COMPUTE_ENV }}
           workdir: s3://${{ secrets.AWS_S3_BUCKET }}/work/marsseq/work-${{ github.sha }}
           parameters: |
             {
-              "outdir": "s3://${{ secrets.AWS_S3_BUCKET }}/marsseq/results-test-${{ github.sha }}",
               "genomes_base": "s3://${{ secrets.AWS_S3_BUCKET }}/marsseq/results-test-${{ github.sha }}/references",
+              "outdir": "s3://${{ secrets.AWS_S3_BUCKET }}/marsseq/results-test-${{ github.sha }}",
               "velocity": true
             }
           profiles: test

diff --git a/CHANGELOG.md b/CHANGELOG.md
@@ -3,11 +3,17 @@
 The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/)
 and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).
 
+## v1.0.3 - [11-07-2023]
+
+### `Fixed`
+
+- AWS testing
+
 ## v1.0.2 - [11-07-2023]
 
 ### `Dependencies`
 
-- [#6](https://github.com/nf-core/marsseq/pull/6) sync with template 2.8
+- [#6](https://github.com/nf-core/marsseq/pull/6) sync with template 2.8 -> 2.9
 - [#4](https://github.com/nf-core/marsseq/issues/4) - Fix AWS testing with s3 bucket
 
 ## v1.0.1 - [26-06-2023]

diff --git a/assets/multiqc_config.yml b/assets/multiqc_config.yml
@@ -1,7 +1,7 @@
 report_comment: >
-  This report has been generated by the <a href="https://github.com/nf-core/marsseq/1.0.2" target="_blank">nf-core/marsseq</a>
+  This report has been generated by the <a href="https://github.com/nf-core/marsseq/1.0.3" target="_blank">nf-core/marsseq</a>
   analysis pipeline. For information about how to interpret these results, please see the
-  <a href="https://nf-co.re/marsseq/1.0.2/output" target="_blank">documentation</a>.
+  <a href="https://nf-co.re/marsseq/1.0.3/output" target="_blank">documentation</a>.
 report_section_order:
   "nf-core-marsseq-methods-description":
     order: -1000

diff --git a/docs/images/workflow.png b/docs/images/workflow.png
diff --git a/nextflow.config b/nextflow.config
@@ -233,7 +233,7 @@ manifest {
     description     = """MARS-seq v2 preprocessing pipeline"""
     mainScript      = 'main.nf'
     nextflowVersion = '!>=23.04.0'
-    version 	    = '1.0.2'
+    version         = '1.0.3'
     doi             = '10.1101/2023.06.28.546862, 10.5281/zenodo.8081210'
 }