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fix read variable in for loop #6921

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MartinPippel
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  • issue:

    • the for loop does always use the full list of given read files in each iteration and creates the same meryl database with different database names
  • solution:

    • use read variable name in bash for loop

PR checklist

  • This comment contains a description of changes (with reason).
  • If you've fixed a bug or added code that should be tested, add tests!
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@mahesh-panchal
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The other tests are updated but merfin has a habit of seg faulting. It takes some tries to get it through.

@MartinPippel MartinPippel added this pull request to the merge queue Nov 4, 2024
@github-merge-queue github-merge-queue bot removed this pull request from the merge queue due to failed status checks Nov 4, 2024
@mahesh-panchal mahesh-panchal added this pull request to the merge queue Nov 5, 2024
@github-merge-queue github-merge-queue bot removed this pull request from the merge queue due to failed status checks Nov 5, 2024
@mahesh-panchal
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I made an issue on the merfin repo to see if they'll do an updated package on bioconda, but I'm not expecting anything anytime soon. I don't have the time to update the bioconda recipe.

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3 participants