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bump vcf2maf to ensembl-vep=113.4 and update containers #9515

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bump vcf2maf to ensembl-vep=113.4 and update containers #9515

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4c811fd
bump to ensembl-vep=113.4 and update containers
JustinBellavance Dec 6, 2025
115d42d
added https:// to container links as required
JustinBellavance Dec 6, 2025
8eec272
removed https:// from docker container. Misread the docs.
JustinBellavance Dec 6, 2025
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2 changes: 1 addition & 1 deletion modules/nf-core/vcf2maf/environment.yml
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Expand Up @@ -4,5 +4,5 @@ channels:
- conda-forge
- bioconda
dependencies:
- bioconda::ensembl-vep=113.3
- bioconda::ensembl-vep=113.4
- bioconda::vcf2maf=1.6.22
4 changes: 2 additions & 2 deletions modules/nf-core/vcf2maf/main.nf
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Expand Up @@ -6,8 +6,8 @@ process VCF2MAF {
// WARN: Version information not provided by tool on CLI. Please update version string below when bumping container versions.
conda "${moduleDir}/environment.yml"
container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
'https://community-cr-prod.seqera.io/docker/registry/v2/blobs/sha256/7c/7cbf9421f0bee23a93a35c5d0c7166ac1e89a40008d8e474cecfddb93226bf65/data':
'community.wave.seqera.io/library/ensembl-vep_vcf2maf:2d40b60b4834af73' }"
'https://community-cr-prod.seqera.io/docker/registry/v2/blobs/sha256/04/04730c70a408fbee8c4a479832b340ca860113c09787061078a66ac56bd3ab56/data':
'community.wave.seqera.io/library/ensembl-vep_vcf2maf:795c7ca795a6c63a' }"

input:
tuple val(meta), path(vcf) // Use an uncompressed VCF file!
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