style: Add ty typechecker

.pre-commit-config.yaml

@@ -29,6 +29,23 @@ repos:
           - types-Markdown
           - types-setuptools
 
+  - repo: local
+    hooks:
+      - id: ty
+        name: ty type checker
+        entry: uv run ty check
+        language: system
+        types: [python]
+        args:
+          [
+            --exclude,
+            "**/venv/**",
+            --exclude,
+            "**/.venv/**",
+            --exclude,
+            "**/__pycache__/**",
+          ]
+
   - repo: https://github.com/renovatebot/pre-commit-hooks
     rev: 38.142.7
     hooks:

pulumi/test_datasets/pyproject.toml

@@ -10,3 +10,24 @@ dependencies = [
     "pulumi-github>=6.7.2",
     "pulumi-onepassword>=1.1.3",
 ]
+
+[dependency-groups]
+dev = [
+    "ty>=0.0.0a6",
+    "mypy>=1.11.1",
+]
+
+# [tool.ty]
+# Configuration for ty type checker - using CLI args for now
+# ty is in pre-alpha, configuration format may change
+
+[tool.mypy]
+# Keep mypy configuration for comparison/fallback
+python_version = "3.12"
+check_untyped_defs = true
+disallow_any_generics = true
+disallow_incomplete_defs = true
+disallow_untyped_defs = true
+no_implicit_optional = true
+warn_redundant_casts = true
+warn_unused_ignores = true

pyproject.toml

@@ -0,0 +1,42 @@
+[project]
+name = "nf-core-ops"
+version = "0.1.0"
+description = "nf-core operations and infrastructure management"
+readme = "README.md"
+requires-python = ">=3.12"
+
+[dependency-groups]
+dev = [
+    "ty>=0.0.0a6",
+    "mypy>=1.11.1",
+    "pre-commit>=3.0.0",
+    "ruff>=0.12.0",
+]
+
+# [tool.ty]
+# Configuration for ty type checker - using CLI args for now
+# ty is in pre-alpha, configuration format may change
+
+[tool.mypy]
+# Keep mypy configuration for comparison/fallback
+python_version = "3.12"
+check_untyped_defs = true
+disallow_any_generics = true
+disallow_incomplete_defs = true
+disallow_untyped_defs = true
+no_implicit_optional = true
+warn_redundant_casts = true
+warn_unused_ignores = true
+exclude = [
+    "venv/",
+    ".venv/",
+    "__pycache__/",
+]
+
+[tool.ruff]
+# Keep existing ruff configuration
+target-version = "py312"
+line-length = 88
+
+[tool.ruff.lint]
+extend-select = ["I"]  # isort