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fix: resolve S3 publishing failures and publishDir configuration casting errors #178

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fix: resolve S3 publishing failures and publishDir configuration casting errors #178

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17 changes: 17 additions & 0 deletions pulumi/AWSMegatests/seqerakit/configs/nextflow-arm.config
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Original file line number Diff line number Diff line change
@@ -0,0 +1,17 @@
// Nextflow configuration for ARM CPU compute environments
// Includes base configuration and ARM-specific settings

includeConfig 'nextflow-base.config'

process {
publishDir = [
path: { params.outdir },
mode: 'copy',
tags: [
'compute_env': 'aws_ireland_fusionv2_nvme_cpu_ARM_snapshots',
'architecture': 'arm64',
'fusion': 'enabled',
'fusionSnapshots': 'enabled'
]
]
}
17 changes: 17 additions & 0 deletions pulumi/AWSMegatests/seqerakit/configs/nextflow-cpu.config
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Original file line number Diff line number Diff line change
@@ -0,0 +1,17 @@
// Nextflow configuration for CPU compute environments
// Includes base configuration and CPU-specific settings

includeConfig 'nextflow-base.config'

process {
publishDir = [
path: { params.outdir },
mode: 'copy',
tags: [
'compute_env': 'aws_ireland_fusionv2_nvme_cpu_snapshots',
'architecture': 'x86_64',
'fusion': 'enabled',
'fusionSnapshots': 'enabled'
]
]
}
18 changes: 18 additions & 0 deletions pulumi/AWSMegatests/seqerakit/configs/nextflow-gpu.config
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Original file line number Diff line number Diff line change
@@ -0,0 +1,18 @@
// Nextflow configuration for GPU compute environments
// Includes base configuration and GPU-specific settings

includeConfig 'nextflow-base.config'

process {
publishDir = [
path: { params.outdir },
mode: 'copy',
tags: [
'compute_env': 'aws_ireland_fusionv2_nvme_gpu_snapshots',
'architecture': 'x86_64',
'gpu': 'enabled',
'fusion': 'enabled',
'fusionSnapshots': 'enabled'
]
]
}
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