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Dev -> Master for 3.16.1

Dev -> Master for 3.16.1 #3068

Triggered via pull request October 16, 2024 12:07
@pinin4fjordspinin4fjords
synchronize #1413
dev
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Run tests (tests/min_mapped_reads.nf.test singularity NF-24.04.2)
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Run tests (subworkflows/nf-core/utils_nfcore_pipeline/tests/main.function.nf.test singularity NF-latest-everything)
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Run tests (subworkflows/nf-core/fastq_qc_trim_filter_setstrandedness/tests/main.nf.test docker NF-latest-everything)
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Run tests (tests/skip_qc.nf.test singularity NF-24.04.2)
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Run tests (tests/default.nf.test docker NF-24.04.2)
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Run tests (tests/skip_qc.nf.test docker NF-24.04.2)
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Run tests (tests/min_mapped_reads.nf.test docker NF-24.04.2)
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Run tests (tests/skip_qc.nf.test conda NF-latest-everything)
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Run tests (tests/skip_trimming.nf.test singularity NF-24.04.2)
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Run tests (subworkflows/nf-core/fastq_fastqc_umitools_trimgalore/tests/main.nf.test docker NF-latest-everything)
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Run tests (subworkflows/nf-core/fastq_fastqc_umitools_fastp/tests/main.nf.test conda NF-latest-everything)
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Run tests (tests/featurecounts_group_type.nf.test conda NF-latest-everything)
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
Run tests (tests/star_rsem.nf.test conda NF-latest-everything)
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Run tests (tests/default.nf.test conda NF-latest-everything)
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Run tests (subworkflows/nf-core/utils_nfschema_plugin/tests/main.nf.test singularity NF-latest-everything)
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Run tests (subworkflows/nf-core/fastq_fastqc_umitools_trimgalore/tests/main.nf.test conda NF-latest-everything)
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Run tests (tests/hisat2.nf.test conda NF-latest-everything)
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Run tests (tests/star_rsem.nf.test docker NF-24.04.2)
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Run tests (tests/skip_trimming.nf.test docker NF-24.04.2)
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Run tests (tests/min_mapped_reads.nf.test conda NF-latest-everything)
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
Run tests (tests/remove_ribo_rna.nf.test singularity NF-24.04.2)
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Run tests (tests/kallisto.nf.test docker NF-latest-everything)
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
Run tests (tests/salmon.nf.test docker NF-latest-everything)
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