Skip to content
nf-core CI

Reduce matrix #3134

Sign in to view logs

Reduce matrix

Reduce matrix #3134

Run time

Learn about OS pricing on GitHub Actions
Job Run time
Check for changes
24s
Run tests (modules/nf-core/kraken2/kraken2/tests/main.nf.test docker NF-24.04.2)
1s
Run tests (modules/nf-core/kraken2/kraken2/tests/main.nf.test singularity NF-24.04.2)
1s
Run tests (modules/nf-core/summarizedexperiment/summarizedexperiment/tests/main.nf.test docker NF-24.04.2)
1s
Run tests (modules/nf-core/summarizedexperiment/summarizedexperiment/tests/main.nf.test singularity NF-24.04.2)
1s
Run tests (modules/nf-core/umitools/prepareforrsem/tests/main.nf.test docker NF-24.04.2)
1s
Run tests (modules/nf-core/umitools/prepareforrsem/tests/main.nf.test singularity NF-24.04.2)
1s
Run tests (tests/salmon.nf.test docker NF-24.04.2)
1s
Run tests (tests/salmon.nf.test singularity NF-24.04.2)
1s
Run tests (tests/featurecounts_group_type.nf.test docker NF-24.04.2)
1s
Run tests (tests/featurecounts_group_type.nf.test singularity NF-24.04.2)
1s
Run tests (modules/nf-core/rseqc/readdistribution/tests/main.nf.test docker NF-24.04.2)
1s
Run tests (modules/nf-core/rseqc/readdistribution/tests/main.nf.test singularity NF-24.04.2)
1s
Run tests (subworkflows/nf-core/fastq_fastqc_umitools_trimgalore/tests/main.nf.test docker NF-24.04.2)
1s
Run tests (subworkflows/nf-core/fastq_fastqc_umitools_trimgalore/tests/main.nf.test singularity NF-24.04.2)
1s
Run tests (modules/nf-core/rsem/preparereference/tests/main.nf.test docker NF-24.04.2)
1s
Run tests (modules/nf-core/rsem/preparereference/tests/main.nf.test singularity NF-24.04.2)
1m 11s
Run tests (modules/nf-core/sortmerna/tests/main.nf.test docker NF-24.04.2)
1m 11s
Run tests (modules/nf-core/sortmerna/tests/main.nf.test singularity NF-24.04.2)
1m 6s
Run tests (subworkflows/nf-core/fastq_qc_trim_filter_setstrandedness/tests/main.function.nf.test docker NF-24.04.2)
1s
Run tests (subworkflows/nf-core/fastq_qc_trim_filter_setstrandedness/tests/main.function.nf.test singularity NF-24.04.2)
1s
Run tests (subworkflows/local/quantify_rsem/tests/main.nf.test docker NF-24.04.2)
1s
Run tests (subworkflows/local/quantify_rsem/tests/main.nf.test singularity NF-24.04.2)
1s
Run tests (modules/nf-core/dupradar/tests/main.nf.test docker NF-24.04.2)
1m 10s
Run tests (modules/nf-core/dupradar/tests/main.nf.test singularity NF-24.04.2)
1m 9s
Run tests (modules/nf-core/umitools/dedup/tests/main.nf.test docker NF-24.04.2)
1m 9s
Run tests (modules/nf-core/umitools/dedup/tests/main.nf.test singularity NF-24.04.2)
1m 9s
Run tests (subworkflows/nf-core/bam_markduplicates_picard/tests/main.nf.test docker NF-24.04.2)
1s
Run tests (subworkflows/nf-core/bam_markduplicates_picard/tests/main.nf.test singularity NF-24.04.2)
1s
Run tests (modules/nf-core/gffread/tests/main.nf.test docker NF-24.04.2)
1m 10s
Run tests (modules/nf-core/gffread/tests/main.nf.test singularity NF-24.04.2)
1m 9s
Run tests (modules/nf-core/kallisto/quant/tests/main.nf.test docker NF-24.04.2)
1m 10s
Run tests (modules/nf-core/kallisto/quant/tests/main.nf.test singularity NF-24.04.2)
1m 7s
Run tests (subworkflows/nf-core/bedgraph_bedclip_bedgraphtobigwig/tests/main.nf.test docker NF-24.04.2)
1s
Run tests (subworkflows/nf-core/bedgraph_bedclip_bedgraphtobigwig/tests/main.nf.test singularity NF-24.04.2)
1s
Run tests (modules/nf-core/subread/featurecounts/tests/main.nf.test docker NF-24.04.2)
1m 10s
Run tests (modules/nf-core/subread/featurecounts/tests/main.nf.test singularity NF-24.04.2)
1m 6s
Run tests (subworkflows/local/utils_nfcore_rnaseq_pipeline/tests/main.pipeline_completion.workflow.nf.test docker NF-24.04.2)
1s
Run tests (subworkflows/local/utils_nfcore_rnaseq_pipeline/tests/main.pipeline_completion.workflow.nf.test singularity NF-24.04.2)
1s
Run tests (subworkflows/nf-core/bam_dedup_stats_samtools_umitools/tests/main.nf.test docker NF-24.04.2)
1s
Run tests (subworkflows/nf-core/bam_dedup_stats_samtools_umitools/tests/main.nf.test singularity NF-24.04.2)
1s
Run tests (modules/nf-core/custom/catadditionalfasta/tests/main.nf.test docker NF-24.04.2)
1m 9s
Run tests (modules/nf-core/custom/catadditionalfasta/tests/main.nf.test singularity NF-24.04.2)
1m 8s
Run tests (modules/nf-core/samtools/flagstat/tests/main.nf.test docker NF-24.04.2)
56s
Run tests (modules/nf-core/samtools/flagstat/tests/main.nf.test singularity NF-24.04.2)
1m 11s
Run tests (modules/nf-core/cat/fastq/tests/main.nf.test docker NF-24.04.2)
1m 11s
Run tests (modules/nf-core/cat/fastq/tests/main.nf.test singularity NF-24.04.2)
1m 9s
Run tests (tests/skip_trimming.nf.test docker NF-24.04.2)
1s
Run tests (tests/skip_trimming.nf.test singularity NF-24.04.2)
1s
Run tests (modules/nf-core/hisat2/extractsplicesites/tests/main.nf.test docker NF-24.04.2)
1m 8s
Run tests (modules/nf-core/hisat2/extractsplicesites/tests/main.nf.test singularity NF-24.04.2)
1m 8s
Run tests (modules/nf-core/fastp/tests/main.nf.test docker NF-24.04.2)
1m 5s
Run tests (modules/nf-core/fastp/tests/main.nf.test singularity NF-24.04.2)
1m 7s
Run tests (modules/nf-core/trimgalore/tests/main.nf.test docker NF-24.04.2)
1m 9s
Run tests (modules/nf-core/trimgalore/tests/main.nf.test singularity NF-24.04.2)
1m 5s
Run tests (modules/nf-core/bbmap/bbsplit/tests/main.nf.test docker NF-24.04.2)
1m 8s
Run tests (modules/nf-core/bbmap/bbsplit/tests/main.nf.test singularity NF-24.04.2)
1m 9s
Run tests (modules/nf-core/custom/tx2gene/tests/main.nf.test docker NF-24.04.2)
1m 8s
Run tests (modules/nf-core/custom/tx2gene/tests/main.nf.test singularity NF-24.04.2)
1m 8s
Run tests (modules/nf-core/bracken/bracken/tests/main.nf.test docker NF-24.04.2)
1m 8s
Run tests (modules/nf-core/bracken/bracken/tests/main.nf.test singularity NF-24.04.2)
1m 7s
Run tests (subworkflows/local/utils_nfcore_rnaseq_pipeline/tests/main.function.nf.test docker NF-24.04.2)
1s
Run tests (subworkflows/local/utils_nfcore_rnaseq_pipeline/tests/main.function.nf.test singularity NF-24.04.2)
1s
Run tests (modules/nf-core/hisat2/build/tests/main.nf.test docker NF-24.04.2)
1m 7s
Run tests (modules/nf-core/hisat2/build/tests/main.nf.test singularity NF-24.04.2)
1m 8s
Run tests (modules/nf-core/rseqc/junctionannotation/tests/main.nf.test docker NF-24.04.2)
1m 8s
Run tests (modules/nf-core/rseqc/junctionannotation/tests/main.nf.test singularity NF-24.04.2)
1m 7s
Run tests (modules/nf-core/ucsc/bedclip/tests/main.nf.test docker NF-24.04.2)
1m 8s
Run tests (modules/nf-core/ucsc/bedclip/tests/main.nf.test singularity NF-24.04.2)
1m 7s
Run tests (modules/nf-core/tximeta/tximport/tests/main.nf.test docker NF-24.04.2)
1m 7s
Run tests (modules/nf-core/tximeta/tximport/tests/main.nf.test singularity NF-24.04.2)
1m 8s
Run tests (modules/nf-core/hisat2/align/tests/main.nf.test docker NF-24.04.2)
1m 8s
Run tests (modules/nf-core/hisat2/align/tests/main.nf.test singularity NF-24.04.2)
1m 4s
Run tests (tests/remove_ribo_rna.nf.test docker NF-24.04.2)
1s
Run tests (tests/remove_ribo_rna.nf.test singularity NF-24.04.2)
1s
Run tests (modules/nf-core/rsem/calculateexpression/tests/main.nf.test docker NF-24.04.2)
1m 7s
Run tests (modules/nf-core/rsem/calculateexpression/tests/main.nf.test singularity NF-24.04.2)
1m 6s
Run tests (subworkflows/nf-core/fastq_fastqc_umitools_fastp/tests/main.nf.test docker NF-24.04.2)
1s
Run tests (subworkflows/nf-core/fastq_fastqc_umitools_fastp/tests/main.nf.test singularity NF-24.04.2)
1s
Run tests (tests/star_rsem.nf.test docker NF-24.04.2)
1s
Run tests (tests/star_rsem.nf.test singularity NF-24.04.2)
1s
Run tests (subworkflows/nf-core/bam_rseqc/tests/main.nf.test docker NF-24.04.2)
1s
Run tests (subworkflows/nf-core/bam_rseqc/tests/main.nf.test singularity NF-24.04.2)
1s
Run tests (subworkflows/local/utils_nfcore_rnaseq_pipeline/tests/main.pipeline_initialisation.workflow.nf.test docker NF-24.04.2)
1s
Run tests (subworkflows/local/utils_nfcore_rnaseq_pipeline/tests/main.pipeline_initialisation.workflow.nf.test singularity NF-24.04.2)
1s
Run tests (modules/nf-core/stringtie/stringtie/tests/main.nf.test docker NF-24.04.2)
1m 7s
Run tests (modules/nf-core/stringtie/stringtie/tests/main.nf.test singularity NF-24.04.2)
1m 7s
Run tests (modules/nf-core/samtools/stats/tests/main.nf.test docker NF-24.04.2)
1m 7s
Run tests (modules/nf-core/samtools/stats/tests/main.nf.test singularity NF-24.04.2)
1m 5s
Run tests (tests/default.nf.test docker NF-24.04.2)
1s
Run tests (tests/default.nf.test singularity NF-24.04.2)
1s
Run tests (modules/nf-core/rseqc/readduplication/tests/main.nf.test docker NF-24.04.2)
1m 8s
Run tests (modules/nf-core/rseqc/readduplication/tests/main.nf.test singularity NF-24.04.2)
1m 4s
Run tests (subworkflows/nf-core/fastq_align_hisat2/tests/main.nf.test docker NF-24.04.2)
1s
Run tests (subworkflows/nf-core/fastq_align_hisat2/tests/main.nf.test singularity NF-24.04.2)
1s
Run tests (modules/nf-core/rseqc/innerdistance/tests/main.nf.test docker NF-24.04.2)
1m 5s
Run tests (modules/nf-core/rseqc/innerdistance/tests/main.nf.test singularity NF-24.04.2)
1s
Run tests (modules/nf-core/samtools/sort/tests/main.nf.test docker NF-24.04.2)
1s
Run tests (modules/nf-core/samtools/sort/tests/main.nf.test singularity NF-24.04.2)
1s
Run tests (modules/nf-core/rseqc/inferexperiment/tests/main.nf.test docker NF-24.04.2)
1s
Run tests (modules/nf-core/rseqc/inferexperiment/tests/main.nf.test singularity NF-24.04.2)
1s
Run tests (subworkflows/nf-core/quantify_pseudo_alignment/tests/main.nf.test docker NF-24.04.2)
1s
Run tests (subworkflows/nf-core/quantify_pseudo_alignment/tests/main.nf.test singularity NF-24.04.2)
1s
Run tests (modules/nf-core/rseqc/bamstat/tests/main.nf.test docker NF-24.04.2)
1s
Run tests (modules/nf-core/rseqc/bamstat/tests/main.nf.test singularity NF-24.04.2)
1s
Run tests (modules/nf-core/star/genomegenerate/tests/main.nf.test docker NF-24.04.2)
1s
Run tests (modules/nf-core/star/genomegenerate/tests/main.nf.test singularity NF-24.04.2)
1s
Run tests (modules/nf-core/fq/subsample/tests/main.nf.test docker NF-24.04.2)
1s
Run tests (modules/nf-core/fq/subsample/tests/main.nf.test singularity NF-24.04.2)
1s
Run tests (modules/nf-core/untar/tests/main.nf.test docker NF-24.04.2)
1s
Run tests (modules/nf-core/untar/tests/main.nf.test singularity NF-24.04.2)
1s
Run tests (tests/skip_qc.nf.test docker NF-24.04.2)
1s
Run tests (tests/skip_qc.nf.test singularity NF-24.04.2)
1s
Run tests (subworkflows/local/prepare_genome/tests/main.nf.test docker NF-24.04.2)
1s
Run tests (subworkflows/local/prepare_genome/tests/main.nf.test singularity NF-24.04.2)
1s
Run tests (modules/nf-core/star/align/tests/main.nf.test docker NF-24.04.2)
1s
Run tests (modules/nf-core/star/align/tests/main.nf.test singularity NF-24.04.2)
1s
Run tests (modules/nf-core/preseq/lcextrap/tests/main.nf.test docker NF-24.04.2)
1s
Run tests (modules/nf-core/preseq/lcextrap/tests/main.nf.test singularity NF-24.04.2)
1s
Run tests (tests/kallisto.nf.test docker NF-24.04.2)
1s
Run tests (tests/kallisto.nf.test singularity NF-24.04.2)
1s
Run tests (modules/nf-core/salmon/index/tests/main.nf.test docker NF-24.04.2)
1s
Run tests (modules/nf-core/salmon/index/tests/main.nf.test singularity NF-24.04.2)
1s
Run tests (modules/nf-core/kallisto/index/tests/main.nf.test docker NF-24.04.2)
1s
Run tests (modules/nf-core/kallisto/index/tests/main.nf.test singularity NF-24.04.2)
1s
Run tests (modules/nf-core/ucsc/bedgraphtobigwig/tests/main.nf.test docker NF-24.04.2)
1s
Run tests (modules/nf-core/ucsc/bedgraphtobigwig/tests/main.nf.test singularity NF-24.04.2)
1s
Run tests (modules/nf-core/salmon/quant/tests/main.nf.test docker NF-24.04.2)
1s
Run tests (modules/nf-core/salmon/quant/tests/main.nf.test singularity NF-24.04.2)
1s
Run tests (modules/nf-core/gunzip/tests/main.nf.test docker NF-24.04.2)
1s
Run tests (modules/nf-core/gunzip/tests/main.nf.test singularity NF-24.04.2)
1s
Run tests (tests/min_mapped_reads.nf.test docker NF-24.04.2)
1s
Run tests (tests/min_mapped_reads.nf.test singularity NF-24.04.2)
1s
Run tests (subworkflows/nf-core/bam_stats_samtools/tests/main.nf.test docker NF-24.04.2)
1s
Run tests (subworkflows/nf-core/bam_stats_samtools/tests/main.nf.test singularity NF-24.04.2)
1s
Run tests (subworkflows/nf-core/bam_sort_stats_samtools/tests/main.nf.test docker NF-24.04.2)
1s
Run tests (subworkflows/nf-core/bam_sort_stats_samtools/tests/main.nf.test singularity NF-24.04.2)
1s
Run tests (modules/nf-core/samtools/index/tests/main.nf.test docker NF-24.04.2)
1s
Run tests (modules/nf-core/samtools/index/tests/main.nf.test singularity NF-24.04.2)
1s
Run tests (tests/hisat2.nf.test docker NF-24.04.2)
1s
Run tests (tests/hisat2.nf.test singularity NF-24.04.2)
1s
Run tests (subworkflows/nf-core/fastq_qc_trim_filter_setstrandedness/tests/main.nf.test docker NF-24.04.2)
1s
Run tests (subworkflows/nf-core/fastq_qc_trim_filter_setstrandedness/tests/main.nf.test singularity NF-24.04.2)
1s
Run tests (modules/nf-core/custom/getchromsizes/tests/main.nf.test docker NF-24.04.2)
1s
Run tests (modules/nf-core/custom/getchromsizes/tests/main.nf.test singularity NF-24.04.2)
1s
Run tests (modules/nf-core/rseqc/tin/tests/main.nf.test docker NF-24.04.2)
1s
Run tests (modules/nf-core/rseqc/tin/tests/main.nf.test singularity NF-24.04.2)
1s
Run tests (subworkflows/local/align_star/tests/main.nf.test docker NF-24.04.2)
1s
Run tests (subworkflows/local/align_star/tests/main.nf.test singularity NF-24.04.2)
1s
Run tests (subworkflows/nf-core/utils_nfschema_plugin/tests/main.nf.test docker NF-24.04.2)
1s
Run tests (subworkflows/nf-core/utils_nfschema_plugin/tests/main.nf.test singularity NF-24.04.2)
1s
Run tests (modules/nf-core/qualimap/rnaseq/tests/main.nf.test docker NF-24.04.2)
1s
Run tests (modules/nf-core/qualimap/rnaseq/tests/main.nf.test singularity NF-24.04.2)
1s
Run tests (subworkflows/nf-core/fastq_subsample_fq_salmon/tests/main.nf.test docker NF-24.04.2)
1s
Run tests (subworkflows/nf-core/fastq_subsample_fq_salmon/tests/main.nf.test singularity NF-24.04.2)
1s
Run tests (modules/nf-core/rseqc/junctionsaturation/tests/main.nf.test docker NF-24.04.2)
1s
Run tests (modules/nf-core/rseqc/junctionsaturation/tests/main.nf.test singularity NF-24.04.2)
1s
Run tests (modules/nf-core/bedtools/genomecov/tests/main.nf.test docker NF-24.04.2)
1s
Run tests (modules/nf-core/bedtools/genomecov/tests/main.nf.test singularity NF-24.04.2)
1s
Run tests (modules/nf-core/samtools/idxstats/tests/main.nf.test docker NF-24.04.2)
1s
Run tests (modules/nf-core/samtools/idxstats/tests/main.nf.test singularity NF-24.04.2)
1m 7s
Run tests (modules/nf-core/kraken2/kraken2/tests/main.nf.test docker NF-latest-everything)
1s
Run tests (modules/nf-core/summarizedexperiment/summarizedexperiment/tests/main.nf.test docker NF-latest-everything)
1s
Run tests (modules/nf-core/umitools/prepareforrsem/tests/main.nf.test docker NF-latest-everything)
1s
Run tests (tests/salmon.nf.test docker NF-latest-everything)
1s
Run tests (tests/featurecounts_group_type.nf.test docker NF-latest-everything)
1s
Run tests (modules/nf-core/rseqc/readdistribution/tests/main.nf.test docker NF-latest-everything)
1s
Run tests (subworkflows/nf-core/fastq_fastqc_umitools_trimgalore/tests/main.nf.test docker NF-latest-everything)
1s
Run tests (modules/nf-core/rsem/preparereference/tests/main.nf.test docker NF-latest-everything)
1s
Run tests (modules/nf-core/sortmerna/tests/main.nf.test docker NF-latest-everything)
1s
Run tests (subworkflows/nf-core/fastq_qc_trim_filter_setstrandedness/tests/main.function.nf.test docker NF-latest-everything)
1s
Run tests (subworkflows/local/quantify_rsem/tests/main.nf.test docker NF-latest-everything)
1s
Run tests (modules/nf-core/dupradar/tests/main.nf.test docker NF-latest-everything)
1s
Run tests (modules/nf-core/umitools/dedup/tests/main.nf.test docker NF-latest-everything)
1s
Run tests (subworkflows/nf-core/bam_markduplicates_picard/tests/main.nf.test docker NF-latest-everything)
1s
Run tests (modules/nf-core/gffread/tests/main.nf.test docker NF-latest-everything)
1s
Run tests (modules/nf-core/kallisto/quant/tests/main.nf.test docker NF-latest-everything)
1s
Run tests (subworkflows/nf-core/bedgraph_bedclip_bedgraphtobigwig/tests/main.nf.test docker NF-latest-everything)
1s
Run tests (modules/nf-core/subread/featurecounts/tests/main.nf.test docker NF-latest-everything)
1s
Run tests (subworkflows/local/utils_nfcore_rnaseq_pipeline/tests/main.pipeline_completion.workflow.nf.test docker NF-latest-everything)
1s
Run tests (subworkflows/nf-core/bam_dedup_stats_samtools_umitools/tests/main.nf.test docker NF-latest-everything)
1s
Run tests (modules/nf-core/custom/catadditionalfasta/tests/main.nf.test docker NF-latest-everything)
1s
Run tests (modules/nf-core/samtools/flagstat/tests/main.nf.test docker NF-latest-everything)
1s
Run tests (modules/nf-core/cat/fastq/tests/main.nf.test docker NF-latest-everything)
1s
Run tests (tests/skip_trimming.nf.test docker NF-latest-everything)
1s
Run tests (modules/nf-core/hisat2/extractsplicesites/tests/main.nf.test docker NF-latest-everything)
1s
Run tests (modules/nf-core/fastp/tests/main.nf.test docker NF-latest-everything)
1s
Run tests (modules/nf-core/trimgalore/tests/main.nf.test docker NF-latest-everything)
1s
Run tests (modules/nf-core/bbmap/bbsplit/tests/main.nf.test docker NF-latest-everything)
1s
Run tests (modules/nf-core/custom/tx2gene/tests/main.nf.test docker NF-latest-everything)
1s
Run tests (modules/nf-core/bracken/bracken/tests/main.nf.test docker NF-latest-everything)
1s
Run tests (subworkflows/local/utils_nfcore_rnaseq_pipeline/tests/main.function.nf.test docker NF-latest-everything)
1s
Run tests (modules/nf-core/hisat2/build/tests/main.nf.test docker NF-latest-everything)
1s
Run tests (modules/nf-core/rseqc/junctionannotation/tests/main.nf.test docker NF-latest-everything)
1s
Run tests (modules/nf-core/ucsc/bedclip/tests/main.nf.test docker NF-latest-everything)
1s
Run tests (modules/nf-core/tximeta/tximport/tests/main.nf.test docker NF-latest-everything)
1s
Run tests (modules/nf-core/hisat2/align/tests/main.nf.test docker NF-latest-everything)
1s
Run tests (tests/remove_ribo_rna.nf.test docker NF-latest-everything)
1s
Run tests (modules/nf-core/rsem/calculateexpression/tests/main.nf.test docker NF-latest-everything)
1s
Run tests (subworkflows/nf-core/fastq_fastqc_umitools_fastp/tests/main.nf.test docker NF-latest-everything)
1s
Run tests (tests/star_rsem.nf.test docker NF-latest-everything)
1s
Run tests (subworkflows/nf-core/bam_rseqc/tests/main.nf.test docker NF-latest-everything)
1s
Run tests (subworkflows/local/utils_nfcore_rnaseq_pipeline/tests/main.pipeline_initialisation.workflow.nf.test docker NF-latest-everything)
1s
Run tests (modules/nf-core/stringtie/stringtie/tests/main.nf.test docker NF-latest-everything)
1s
Run tests (modules/nf-core/samtools/stats/tests/main.nf.test docker NF-latest-everything)
1s
Run tests (tests/default.nf.test docker NF-latest-everything)
1s
Run tests (modules/nf-core/rseqc/readduplication/tests/main.nf.test docker NF-latest-everything)
1s
Run tests (subworkflows/nf-core/fastq_align_hisat2/tests/main.nf.test docker NF-latest-everything)
1s
Run tests (modules/nf-core/rseqc/innerdistance/tests/main.nf.test docker NF-latest-everything)
1s
Run tests (modules/nf-core/samtools/sort/tests/main.nf.test docker NF-latest-everything)
1s
Run tests (modules/nf-core/rseqc/inferexperiment/tests/main.nf.test docker NF-latest-everything)
1s
Run tests (subworkflows/nf-core/quantify_pseudo_alignment/tests/main.nf.test docker NF-latest-everything)
1s
Run tests (modules/nf-core/rseqc/bamstat/tests/main.nf.test docker NF-latest-everything)
1s
Run tests (modules/nf-core/star/genomegenerate/tests/main.nf.test docker NF-latest-everything)
1s
Run tests (modules/nf-core/fq/subsample/tests/main.nf.test docker NF-latest-everything)
1s
Run tests (modules/nf-core/untar/tests/main.nf.test docker NF-latest-everything)
1s
Run tests (tests/skip_qc.nf.test docker NF-latest-everything)
1s
Run tests (subworkflows/local/prepare_genome/tests/main.nf.test docker NF-latest-everything)
1s
Run tests (modules/nf-core/star/align/tests/main.nf.test docker NF-latest-everything)
1s
Run tests (modules/nf-core/preseq/lcextrap/tests/main.nf.test docker NF-latest-everything)
1s
Run tests (tests/kallisto.nf.test docker NF-latest-everything)
1s
Run tests (modules/nf-core/salmon/index/tests/main.nf.test docker NF-latest-everything)
1s
Run tests (modules/nf-core/kallisto/index/tests/main.nf.test docker NF-latest-everything)
1s
Run tests (modules/nf-core/ucsc/bedgraphtobigwig/tests/main.nf.test docker NF-latest-everything)
1s
Run tests (modules/nf-core/salmon/quant/tests/main.nf.test docker NF-latest-everything)
1s
Run tests (modules/nf-core/gunzip/tests/main.nf.test docker NF-latest-everything)
1s
Run tests (tests/min_mapped_reads.nf.test docker NF-latest-everything)
1s
Run tests (subworkflows/nf-core/bam_stats_samtools/tests/main.nf.test docker NF-latest-everything)
1s
Run tests (subworkflows/nf-core/bam_sort_stats_samtools/tests/main.nf.test docker NF-latest-everything)
1s
Run tests (modules/nf-core/samtools/index/tests/main.nf.test docker NF-latest-everything)
1s
Run tests (tests/hisat2.nf.test docker NF-latest-everything)
1s
Run tests (subworkflows/nf-core/fastq_qc_trim_filter_setstrandedness/tests/main.nf.test docker NF-latest-everything)
1s
Run tests (modules/nf-core/custom/getchromsizes/tests/main.nf.test docker NF-latest-everything)
1s
Run tests (modules/nf-core/rseqc/tin/tests/main.nf.test docker NF-latest-everything)
1s
Run tests (subworkflows/local/align_star/tests/main.nf.test docker NF-latest-everything)
1s
Run tests (subworkflows/nf-core/utils_nfschema_plugin/tests/main.nf.test docker NF-latest-everything)
1s
Run tests (modules/nf-core/qualimap/rnaseq/tests/main.nf.test docker NF-latest-everything)
1s
Run tests (subworkflows/nf-core/fastq_subsample_fq_salmon/tests/main.nf.test docker NF-latest-everything)
1s
Run tests (modules/nf-core/rseqc/junctionsaturation/tests/main.nf.test docker NF-latest-everything)
1s
Run tests (modules/nf-core/bedtools/genomecov/tests/main.nf.test docker NF-latest-everything)
1s
Run tests (modules/nf-core/samtools/idxstats/tests/main.nf.test docker NF-latest-everything)
1s
confirm-pass
1s
1h 1m 0s