Dev -> Master for 3.17.0 #3140

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Job	Run time
Check for changes	29s
Check for changes	29s
Run tests (modules/nf-core/rseqc/junctionannotation/tests/main.nf.test docker NF-24.04.2)	3m 11s
Run tests (modules/nf-core/rseqc/junctionannotation/tests/main.nf.test docker NF-24.04.2)	3m 11s
Run tests (modules/nf-core/rseqc/junctionannotation/tests/main.nf.test singularity NF-24.04.2)	3m 5s
Run tests (modules/nf-core/rseqc/junctionannotation/tests/main.nf.test singularity NF-24.04.2)	3m 5s
Run tests (subworkflows/nf-core/bam_sort_stats_samtools/tests/main.nf.test docker NF-24.04.2)	3m 47s
Run tests (subworkflows/nf-core/bam_sort_stats_samtools/tests/main.nf.test docker NF-24.04.2)	3m 47s
Run tests (subworkflows/nf-core/bam_sort_stats_samtools/tests/main.nf.test singularity NF-24.04.2)	3m 45s
Run tests (subworkflows/nf-core/bam_sort_stats_samtools/tests/main.nf.test singularity NF-24.04.2)	3m 45s
Run tests (modules/nf-core/samtools/index/tests/main.nf.test docker NF-24.04.2)	5m 23s
Run tests (modules/nf-core/samtools/index/tests/main.nf.test docker NF-24.04.2)	5m 23s
Run tests (modules/nf-core/samtools/index/tests/main.nf.test singularity NF-24.04.2)	3m 47s
Run tests (modules/nf-core/samtools/index/tests/main.nf.test singularity NF-24.04.2)	3m 47s
Run tests (modules/nf-core/rseqc/innerdistance/tests/main.nf.test docker NF-24.04.2)	3m 21s
Run tests (modules/nf-core/rseqc/innerdistance/tests/main.nf.test docker NF-24.04.2)	3m 21s
Run tests (modules/nf-core/rseqc/innerdistance/tests/main.nf.test singularity NF-24.04.2)	3m 46s
Run tests (modules/nf-core/rseqc/innerdistance/tests/main.nf.test singularity NF-24.04.2)	3m 46s
Run tests (modules/nf-core/salmon/index/tests/main.nf.test docker NF-24.04.2)	4m 55s
Run tests (modules/nf-core/salmon/index/tests/main.nf.test docker NF-24.04.2)	4m 55s
Run tests (modules/nf-core/salmon/index/tests/main.nf.test singularity NF-24.04.2)	3m 24s
Run tests (modules/nf-core/salmon/index/tests/main.nf.test singularity NF-24.04.2)	3m 24s
Run tests (tests/min_mapped_reads.nf.test docker NF-24.04.2)	14m 44s
Run tests (tests/min_mapped_reads.nf.test docker NF-24.04.2)	14m 44s
Run tests (tests/min_mapped_reads.nf.test singularity NF-24.04.2)	13m 47s
Run tests (tests/min_mapped_reads.nf.test singularity NF-24.04.2)	13m 47s
Run tests (modules/nf-core/rseqc/readdistribution/tests/main.nf.test docker NF-24.04.2)	3m 5s
Run tests (modules/nf-core/rseqc/readdistribution/tests/main.nf.test docker NF-24.04.2)	3m 5s
Run tests (modules/nf-core/rseqc/readdistribution/tests/main.nf.test singularity NF-24.04.2)	4m 21s
Run tests (modules/nf-core/rseqc/readdistribution/tests/main.nf.test singularity NF-24.04.2)	4m 21s
Run tests (modules/nf-core/gffread/tests/main.nf.test docker NF-24.04.2)	3m 40s
Run tests (modules/nf-core/gffread/tests/main.nf.test docker NF-24.04.2)	3m 40s
Run tests (modules/nf-core/gffread/tests/main.nf.test singularity NF-24.04.2)	3m 40s
Run tests (modules/nf-core/gffread/tests/main.nf.test singularity NF-24.04.2)	3m 40s
Run tests (modules/nf-core/untar/tests/main.nf.test docker NF-24.04.2)	3m 27s
Run tests (modules/nf-core/untar/tests/main.nf.test docker NF-24.04.2)	3m 27s
Run tests (modules/nf-core/untar/tests/main.nf.test singularity NF-24.04.2)	3m 13s
Run tests (modules/nf-core/untar/tests/main.nf.test singularity NF-24.04.2)	3m 13s
Run tests (modules/nf-core/kallisto/index/tests/main.nf.test docker NF-24.04.2)	3m 5s
Run tests (modules/nf-core/kallisto/index/tests/main.nf.test docker NF-24.04.2)	3m 5s
Run tests (modules/nf-core/kallisto/index/tests/main.nf.test singularity NF-24.04.2)	2m 56s
Run tests (modules/nf-core/kallisto/index/tests/main.nf.test singularity NF-24.04.2)	2m 56s
Run tests (modules/nf-core/hisat2/extractsplicesites/tests/main.nf.test docker NF-24.04.2)	3m 19s
Run tests (modules/nf-core/hisat2/extractsplicesites/tests/main.nf.test docker NF-24.04.2)	3m 19s
Run tests (modules/nf-core/hisat2/extractsplicesites/tests/main.nf.test singularity NF-24.04.2)	3m 21s
Run tests (modules/nf-core/hisat2/extractsplicesites/tests/main.nf.test singularity NF-24.04.2)	3m 21s
Run tests (subworkflows/nf-core/fastq_align_hisat2/tests/main.nf.test docker NF-24.04.2)	4m 32s
Run tests (subworkflows/nf-core/fastq_align_hisat2/tests/main.nf.test docker NF-24.04.2)	4m 32s
Run tests (subworkflows/nf-core/fastq_align_hisat2/tests/main.nf.test singularity NF-24.04.2)	6m 11s
Run tests (subworkflows/nf-core/fastq_align_hisat2/tests/main.nf.test singularity NF-24.04.2)	6m 11s
Run tests (modules/nf-core/kraken2/kraken2/tests/main.nf.test docker NF-24.04.2)	5m 21s
Run tests (modules/nf-core/kraken2/kraken2/tests/main.nf.test docker NF-24.04.2)	5m 21s
Run tests (modules/nf-core/kraken2/kraken2/tests/main.nf.test singularity NF-24.04.2)	3m 26s
Run tests (modules/nf-core/kraken2/kraken2/tests/main.nf.test singularity NF-24.04.2)	3m 26s
Run tests (tests/hisat2.nf.test docker NF-24.04.2)	13m 20s
Run tests (tests/hisat2.nf.test docker NF-24.04.2)	13m 20s
Run tests (tests/hisat2.nf.test singularity NF-24.04.2)	12m 55s
Run tests (tests/hisat2.nf.test singularity NF-24.04.2)	12m 55s
Run tests (subworkflows/nf-core/bam_rseqc/tests/main.nf.test docker NF-24.04.2)	3m 44s
Run tests (subworkflows/nf-core/bam_rseqc/tests/main.nf.test docker NF-24.04.2)	3m 44s
Run tests (subworkflows/nf-core/bam_rseqc/tests/main.nf.test singularity NF-24.04.2)	6m 46s
Run tests (subworkflows/nf-core/bam_rseqc/tests/main.nf.test singularity NF-24.04.2)	6m 46s
Run tests (modules/nf-core/rseqc/inferexperiment/tests/main.nf.test docker NF-24.04.2)	4m 10s
Run tests (modules/nf-core/rseqc/inferexperiment/tests/main.nf.test docker NF-24.04.2)	4m 10s
Run tests (modules/nf-core/rseqc/inferexperiment/tests/main.nf.test singularity NF-24.04.2)	3m 2s
Run tests (modules/nf-core/rseqc/inferexperiment/tests/main.nf.test singularity NF-24.04.2)	3m 2s
Run tests (subworkflows/nf-core/fastq_subsample_fq_salmon/tests/main.nf.test docker NF-24.04.2)	5m 34s
Run tests (subworkflows/nf-core/fastq_subsample_fq_salmon/tests/main.nf.test docker NF-24.04.2)	5m 34s
Run tests (subworkflows/nf-core/fastq_subsample_fq_salmon/tests/main.nf.test singularity NF-24.04.2)	3m 35s
Run tests (subworkflows/nf-core/fastq_subsample_fq_salmon/tests/main.nf.test singularity NF-24.04.2)	3m 35s
Run tests (modules/nf-core/custom/catadditionalfasta/tests/main.nf.test docker NF-24.04.2)	2m 53s
Run tests (modules/nf-core/custom/catadditionalfasta/tests/main.nf.test docker NF-24.04.2)	2m 53s
Run tests (modules/nf-core/custom/catadditionalfasta/tests/main.nf.test singularity NF-24.04.2)	3m 9s
Run tests (modules/nf-core/custom/catadditionalfasta/tests/main.nf.test singularity NF-24.04.2)	3m 9s
Run tests (subworkflows/nf-core/fastq_qc_trim_filter_setstrandedness/tests/main.nf.test docker NF-24.04.2)	5m 27s
Run tests (subworkflows/nf-core/fastq_qc_trim_filter_setstrandedness/tests/main.nf.test docker NF-24.04.2)	5m 27s
Run tests (subworkflows/nf-core/fastq_qc_trim_filter_setstrandedness/tests/main.nf.test singularity NF-24.04.2)	5m 30s
Run tests (subworkflows/nf-core/fastq_qc_trim_filter_setstrandedness/tests/main.nf.test singularity NF-24.04.2)	3m 54s
Run tests (modules/nf-core/ucsc/bedgraphtobigwig/tests/main.nf.test docker NF-24.04.2)	2m 51s
Run tests (modules/nf-core/ucsc/bedgraphtobigwig/tests/main.nf.test docker NF-24.04.2)	2m 51s
Run tests (modules/nf-core/ucsc/bedgraphtobigwig/tests/main.nf.test singularity NF-24.04.2)	5m 56s
Run tests (modules/nf-core/ucsc/bedgraphtobigwig/tests/main.nf.test singularity NF-24.04.2)	5m 56s
Run tests (subworkflows/nf-core/bam_stats_samtools/tests/main.nf.test docker NF-24.04.2)	3m 59s
Run tests (subworkflows/nf-core/bam_stats_samtools/tests/main.nf.test docker NF-24.04.2)	3m 59s
Run tests (subworkflows/nf-core/bam_stats_samtools/tests/main.nf.test singularity NF-24.04.2)	3m 49s
Run tests (subworkflows/nf-core/bam_stats_samtools/tests/main.nf.test singularity NF-24.04.2)	3m 49s
Run tests (tests/remove_ribo_rna.nf.test docker NF-24.04.2)	17m 53s
Run tests (tests/remove_ribo_rna.nf.test docker NF-24.04.2)	17m 53s
Run tests (tests/remove_ribo_rna.nf.test singularity NF-24.04.2)	16m 20s
Run tests (tests/remove_ribo_rna.nf.test singularity NF-24.04.2)	16m 20s
Run tests (modules/nf-core/subread/featurecounts/tests/main.nf.test docker NF-24.04.2)	3m 41s
Run tests (modules/nf-core/subread/featurecounts/tests/main.nf.test docker NF-24.04.2)	3m 41s
Run tests (modules/nf-core/subread/featurecounts/tests/main.nf.test singularity NF-24.04.2)	4m 6s
Run tests (modules/nf-core/subread/featurecounts/tests/main.nf.test singularity NF-24.04.2)	4m 6s
Run tests (modules/nf-core/qualimap/rnaseq/tests/main.nf.test docker NF-24.04.2)	3m 15s
Run tests (modules/nf-core/qualimap/rnaseq/tests/main.nf.test docker NF-24.04.2)	3m 15s
Run tests (modules/nf-core/qualimap/rnaseq/tests/main.nf.test singularity NF-24.04.2)	5m 15s
Run tests (modules/nf-core/qualimap/rnaseq/tests/main.nf.test singularity NF-24.04.2)	5m 15s
Run tests (modules/nf-core/rseqc/readduplication/tests/main.nf.test docker NF-24.04.2)	3m 19s
Run tests (modules/nf-core/rseqc/readduplication/tests/main.nf.test docker NF-24.04.2)	3m 19s
Run tests (modules/nf-core/rseqc/readduplication/tests/main.nf.test singularity NF-24.04.2)	5m 44s
Run tests (modules/nf-core/rseqc/readduplication/tests/main.nf.test singularity NF-24.04.2)	5m 44s
Run tests (modules/nf-core/fq/subsample/tests/main.nf.test docker NF-24.04.2)	3m 50s
Run tests (modules/nf-core/fq/subsample/tests/main.nf.test docker NF-24.04.2)	3m 50s
Run tests (modules/nf-core/fq/subsample/tests/main.nf.test singularity NF-24.04.2)	3m 53s
Run tests (modules/nf-core/fq/subsample/tests/main.nf.test singularity NF-24.04.2)	3m 53s
Run tests (modules/nf-core/samtools/stats/tests/main.nf.test docker NF-24.04.2)	5m 4s
Run tests (modules/nf-core/samtools/stats/tests/main.nf.test docker NF-24.04.2)	5m 4s
Run tests (modules/nf-core/samtools/stats/tests/main.nf.test singularity NF-24.04.2)	3m 55s
Run tests (modules/nf-core/samtools/stats/tests/main.nf.test singularity NF-24.04.2)	3m 55s
Run tests (subworkflows/nf-core/fastq_fastqc_umitools_trimgalore/tests/main.nf.test docker NF-24.04.2)	6m 19s
Run tests (subworkflows/nf-core/fastq_fastqc_umitools_trimgalore/tests/main.nf.test docker NF-24.04.2)	6m 19s
Run tests (subworkflows/nf-core/fastq_fastqc_umitools_trimgalore/tests/main.nf.test singularity NF-24.04.2)	6m 24s
Run tests (subworkflows/nf-core/fastq_fastqc_umitools_trimgalore/tests/main.nf.test singularity NF-24.04.2)	6m 24s
Run tests (modules/nf-core/preseq/lcextrap/tests/main.nf.test docker NF-24.04.2)	4m 51s
Run tests (modules/nf-core/preseq/lcextrap/tests/main.nf.test docker NF-24.04.2)	4m 51s
Run tests (modules/nf-core/preseq/lcextrap/tests/main.nf.test singularity NF-24.04.2)	6m 7s
Run tests (modules/nf-core/preseq/lcextrap/tests/main.nf.test singularity NF-24.04.2)	6m 7s
Run tests (tests/salmon.nf.test docker NF-24.04.2)	9m 13s
Run tests (tests/salmon.nf.test docker NF-24.04.2)	9m 13s
Run tests (tests/salmon.nf.test singularity NF-24.04.2)	25m 38s
Run tests (tests/salmon.nf.test singularity NF-24.04.2)	25m 38s
Run tests (modules/nf-core/rseqc/bamstat/tests/main.nf.test docker NF-24.04.2)	5m 35s
Run tests (modules/nf-core/rseqc/bamstat/tests/main.nf.test docker NF-24.04.2)	5m 35s
Run tests (modules/nf-core/rseqc/bamstat/tests/main.nf.test singularity NF-24.04.2)	3m 1s
Run tests (modules/nf-core/rseqc/bamstat/tests/main.nf.test singularity NF-24.04.2)	3m 1s
Run tests (modules/nf-core/rseqc/junctionsaturation/tests/main.nf.test docker NF-24.04.2)	3m 29s
Run tests (modules/nf-core/rseqc/junctionsaturation/tests/main.nf.test docker NF-24.04.2)	3m 29s
Run tests (modules/nf-core/rseqc/junctionsaturation/tests/main.nf.test singularity NF-24.04.2)	3m 44s
Run tests (modules/nf-core/rseqc/junctionsaturation/tests/main.nf.test singularity NF-24.04.2)	3m 44s
Run tests (modules/nf-core/trimgalore/tests/main.nf.test docker NF-24.04.2)	3m 37s
Run tests (modules/nf-core/trimgalore/tests/main.nf.test docker NF-24.04.2)	3m 37s
Run tests (modules/nf-core/trimgalore/tests/main.nf.test singularity NF-24.04.2)	8m 32s
Run tests (modules/nf-core/trimgalore/tests/main.nf.test singularity NF-24.04.2)	8m 32s
Run tests (subworkflows/local/utils_nfcore_rnaseq_pipeline/tests/main.function.nf.test docker NF-24.04.2)	6m 34s
Run tests (subworkflows/local/utils_nfcore_rnaseq_pipeline/tests/main.function.nf.test docker NF-24.04.2)	6m 34s
Run tests (subworkflows/local/utils_nfcore_rnaseq_pipeline/tests/main.function.nf.test singularity NF-24.04.2)	8m 29s
Run tests (subworkflows/local/utils_nfcore_rnaseq_pipeline/tests/main.function.nf.test singularity NF-24.04.2)	8m 29s
Run tests (subworkflows/nf-core/bam_markduplicates_picard/tests/main.nf.test docker NF-24.04.2)	3m 55s
Run tests (subworkflows/nf-core/bam_markduplicates_picard/tests/main.nf.test docker NF-24.04.2)	3m 55s
Run tests (subworkflows/nf-core/bam_markduplicates_picard/tests/main.nf.test singularity NF-24.04.2)	3m 50s
Run tests (subworkflows/nf-core/bam_markduplicates_picard/tests/main.nf.test singularity NF-24.04.2)	3m 50s
Run tests (modules/nf-core/sortmerna/tests/main.nf.test docker NF-24.04.2)	5m 41s
Run tests (modules/nf-core/sortmerna/tests/main.nf.test docker NF-24.04.2)	5m 41s
Run tests (modules/nf-core/sortmerna/tests/main.nf.test singularity NF-24.04.2)	4m 54s
Run tests (modules/nf-core/sortmerna/tests/main.nf.test singularity NF-24.04.2)	4m 54s
Run tests (modules/nf-core/ucsc/bedclip/tests/main.nf.test docker NF-24.04.2)	2m 43s
Run tests (modules/nf-core/ucsc/bedclip/tests/main.nf.test docker NF-24.04.2)	2m 43s
Run tests (modules/nf-core/ucsc/bedclip/tests/main.nf.test singularity NF-24.04.2)	3m 25s
Run tests (modules/nf-core/ucsc/bedclip/tests/main.nf.test singularity NF-24.04.2)	3m 25s
Run tests (subworkflows/local/utils_nfcore_rnaseq_pipeline/tests/main.pipeline_completion.workflow.nf.test docker NF-24.04.2)	2m 45s
Run tests (subworkflows/local/utils_nfcore_rnaseq_pipeline/tests/main.pipeline_completion.workflow.nf.test docker NF-24.04.2)	2m 45s
Run tests (subworkflows/local/utils_nfcore_rnaseq_pipeline/tests/main.pipeline_completion.workflow.nf.test singularity NF-24.04.2)	4m 15s
Run tests (subworkflows/local/utils_nfcore_rnaseq_pipeline/tests/main.pipeline_completion.workflow.nf.test singularity NF-24.04.2)	4m 15s
Run tests (modules/nf-core/gunzip/tests/main.nf.test docker NF-24.04.2)	5m 23s
Run tests (modules/nf-core/gunzip/tests/main.nf.test docker NF-24.04.2)	5m 23s
Run tests (modules/nf-core/gunzip/tests/main.nf.test singularity NF-24.04.2)	3m 58s
Run tests (modules/nf-core/gunzip/tests/main.nf.test singularity NF-24.04.2)	3m 58s
Run tests (modules/nf-core/dupradar/tests/main.nf.test docker NF-24.04.2)	5m 41s
Run tests (modules/nf-core/dupradar/tests/main.nf.test docker NF-24.04.2)	5m 41s
Run tests (modules/nf-core/dupradar/tests/main.nf.test singularity NF-24.04.2)	5m 26s
Run tests (modules/nf-core/dupradar/tests/main.nf.test singularity NF-24.04.2)	5m 26s
Run tests (tests/default.nf.test docker NF-24.04.2)	14m 5s
Run tests (tests/default.nf.test docker NF-24.04.2)	14m 5s
Run tests (tests/default.nf.test singularity NF-24.04.2)	15m 41s
Run tests (tests/default.nf.test singularity NF-24.04.2)	15m 41s
Run tests (modules/nf-core/bracken/bracken/tests/main.nf.test docker NF-24.04.2)	6m 23s
Run tests (modules/nf-core/bracken/bracken/tests/main.nf.test docker NF-24.04.2)	6m 23s
Run tests (modules/nf-core/bracken/bracken/tests/main.nf.test singularity NF-24.04.2)	4m 20s
Run tests (modules/nf-core/bracken/bracken/tests/main.nf.test singularity NF-24.04.2)	4m 20s
Run tests (tests/skip_qc.nf.test docker NF-24.04.2)	11m 29s
Run tests (tests/skip_qc.nf.test docker NF-24.04.2)	11m 29s
Run tests (tests/skip_qc.nf.test singularity NF-24.04.2)	13m 19s
Run tests (tests/skip_qc.nf.test singularity NF-24.04.2)	13m 19s
Run tests (modules/nf-core/hisat2/align/tests/main.nf.test docker NF-24.04.2)	4m 38s
Run tests (modules/nf-core/hisat2/align/tests/main.nf.test docker NF-24.04.2)	4m 38s
Run tests (modules/nf-core/hisat2/align/tests/main.nf.test singularity NF-24.04.2)	5m 51s
Run tests (modules/nf-core/hisat2/align/tests/main.nf.test singularity NF-24.04.2)	5m 51s
Run tests (subworkflows/nf-core/bam_dedup_stats_samtools_umitools/tests/main.nf.test docker NF-24.04.2)	5m 0s
Run tests (subworkflows/nf-core/bam_dedup_stats_samtools_umitools/tests/main.nf.test docker NF-24.04.2)	5m 0s
Run tests (subworkflows/nf-core/bam_dedup_stats_samtools_umitools/tests/main.nf.test singularity NF-24.04.2)	3m 20s
Run tests (subworkflows/nf-core/bam_dedup_stats_samtools_umitools/tests/main.nf.test singularity NF-24.04.2)	3m 20s
Run tests (modules/nf-core/samtools/sort/tests/main.nf.test docker NF-24.04.2)	4m 1s
Run tests (modules/nf-core/samtools/sort/tests/main.nf.test docker NF-24.04.2)	4m 1s
Run tests (modules/nf-core/samtools/sort/tests/main.nf.test singularity NF-24.04.2)	4m 11s
Run tests (modules/nf-core/samtools/sort/tests/main.nf.test singularity NF-24.04.2)	4m 11s
Run tests (tests/star_rsem.nf.test docker NF-24.04.2)	13m 20s
Run tests (tests/star_rsem.nf.test docker NF-24.04.2)	13m 20s
Run tests (tests/star_rsem.nf.test singularity NF-24.04.2)	14m 7s
Run tests (tests/star_rsem.nf.test singularity NF-24.04.2)	14m 7s
Run tests (modules/nf-core/hisat2/build/tests/main.nf.test docker NF-24.04.2)	4m 11s
Run tests (modules/nf-core/hisat2/build/tests/main.nf.test docker NF-24.04.2)	4m 11s
Run tests (modules/nf-core/hisat2/build/tests/main.nf.test singularity NF-24.04.2)	3m 36s
Run tests (modules/nf-core/hisat2/build/tests/main.nf.test singularity NF-24.04.2)	3m 36s
Run tests (modules/nf-core/samtools/flagstat/tests/main.nf.test docker NF-24.04.2)	4m 6s
Run tests (modules/nf-core/samtools/flagstat/tests/main.nf.test docker NF-24.04.2)	4m 6s
Run tests (modules/nf-core/samtools/flagstat/tests/main.nf.test singularity NF-24.04.2)	4m 30s
Run tests (modules/nf-core/samtools/flagstat/tests/main.nf.test singularity NF-24.04.2)	4m 30s
Run tests (modules/nf-core/summarizedexperiment/summarizedexperiment/tests/main.nf.test docker NF-24.04.2)	6m 39s
Run tests (modules/nf-core/summarizedexperiment/summarizedexperiment/tests/main.nf.test docker NF-24.04.2)	6m 39s
Run tests (modules/nf-core/summarizedexperiment/summarizedexperiment/tests/main.nf.test singularity NF-24.04.2)	6m 46s
Run tests (modules/nf-core/summarizedexperiment/summarizedexperiment/tests/main.nf.test singularity NF-24.04.2)	6m 46s
Run tests (subworkflows/local/align_star/tests/main.nf.test docker NF-24.04.2)	7m 7s
Run tests (subworkflows/local/align_star/tests/main.nf.test docker NF-24.04.2)	7m 7s
Run tests (subworkflows/local/align_star/tests/main.nf.test singularity NF-24.04.2)	6m 50s
Run tests (subworkflows/local/align_star/tests/main.nf.test singularity NF-24.04.2)	6m 50s
Run tests (modules/nf-core/custom/getchromsizes/tests/main.nf.test docker NF-24.04.2)	3m 17s
Run tests (modules/nf-core/custom/getchromsizes/tests/main.nf.test docker NF-24.04.2)	3m 17s
Run tests (modules/nf-core/custom/getchromsizes/tests/main.nf.test singularity NF-24.04.2)	3m 32s
Run tests (modules/nf-core/custom/getchromsizes/tests/main.nf.test singularity NF-24.04.2)	3m 32s
Run tests (tests/featurecounts_group_type.nf.test docker NF-24.04.2)	13m 41s
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Run tests (modules/nf-core/star/align/tests/main.nf.test docker NF-24.04.2)	12m 12s
Run tests (modules/nf-core/star/align/tests/main.nf.test docker NF-24.04.2)	12m 12s
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Run tests (subworkflows/nf-core/bam_sort_stats_samtools/tests/main.nf.test docker NF-latest-everything)	3m 17s
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Run tests (modules/nf-core/rseqc/innerdistance/tests/main.nf.test docker NF-latest-everything)	4m 29s
Run tests (modules/nf-core/rseqc/innerdistance/tests/main.nf.test docker NF-latest-everything)	4m 29s
Run tests (modules/nf-core/salmon/index/tests/main.nf.test docker NF-latest-everything)	2m 42s
Run tests (modules/nf-core/salmon/index/tests/main.nf.test docker NF-latest-everything)	2m 42s
Run tests (tests/min_mapped_reads.nf.test docker NF-latest-everything)	14m 49s
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Run tests (modules/nf-core/rseqc/readdistribution/tests/main.nf.test docker NF-latest-everything)	2m 58s
Run tests (modules/nf-core/rseqc/readdistribution/tests/main.nf.test docker NF-latest-everything)	2m 58s
Run tests (modules/nf-core/gffread/tests/main.nf.test docker NF-latest-everything)	3m 38s
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Run tests (modules/nf-core/kallisto/index/tests/main.nf.test docker NF-latest-everything)	4m 49s
Run tests (modules/nf-core/kallisto/index/tests/main.nf.test docker NF-latest-everything)	4m 49s
Run tests (modules/nf-core/hisat2/extractsplicesites/tests/main.nf.test docker NF-latest-everything)	3m 57s
Run tests (modules/nf-core/hisat2/extractsplicesites/tests/main.nf.test docker NF-latest-everything)	3m 57s
Run tests (subworkflows/nf-core/fastq_align_hisat2/tests/main.nf.test docker NF-latest-everything)	4m 12s
Run tests (subworkflows/nf-core/fastq_align_hisat2/tests/main.nf.test docker NF-latest-everything)	4m 12s
Run tests (modules/nf-core/kraken2/kraken2/tests/main.nf.test docker NF-latest-everything)	3m 29s
Run tests (modules/nf-core/kraken2/kraken2/tests/main.nf.test docker NF-latest-everything)	3m 29s
Run tests (tests/hisat2.nf.test docker NF-latest-everything)	11m 43s
Run tests (tests/hisat2.nf.test docker NF-latest-everything)	11m 43s
Run tests (subworkflows/nf-core/bam_rseqc/tests/main.nf.test docker NF-latest-everything)	4m 10s
Run tests (subworkflows/nf-core/bam_rseqc/tests/main.nf.test docker NF-latest-everything)	4m 10s
Run tests (modules/nf-core/rseqc/inferexperiment/tests/main.nf.test docker NF-latest-everything)	6m 53s
Run tests (modules/nf-core/rseqc/inferexperiment/tests/main.nf.test docker NF-latest-everything)	6m 53s
Run tests (subworkflows/nf-core/fastq_subsample_fq_salmon/tests/main.nf.test docker NF-latest-everything)	4m 1s
Run tests (subworkflows/nf-core/fastq_subsample_fq_salmon/tests/main.nf.test docker NF-latest-everything)	4m 1s
Run tests (modules/nf-core/custom/catadditionalfasta/tests/main.nf.test docker NF-latest-everything)	2m 46s
Run tests (modules/nf-core/custom/catadditionalfasta/tests/main.nf.test docker NF-latest-everything)	2m 46s
Run tests (subworkflows/nf-core/fastq_qc_trim_filter_setstrandedness/tests/main.nf.test docker NF-latest-everything)	5m 30s
Run tests (subworkflows/nf-core/fastq_qc_trim_filter_setstrandedness/tests/main.nf.test docker NF-latest-everything)	5m 30s
Run tests (modules/nf-core/ucsc/bedgraphtobigwig/tests/main.nf.test docker NF-latest-everything)	4m 22s
Run tests (modules/nf-core/ucsc/bedgraphtobigwig/tests/main.nf.test docker NF-latest-everything)	4m 22s
Run tests (subworkflows/nf-core/bam_stats_samtools/tests/main.nf.test docker NF-latest-everything)	4m 0s
Run tests (subworkflows/nf-core/bam_stats_samtools/tests/main.nf.test docker NF-latest-everything)	4m 0s
Run tests (tests/remove_ribo_rna.nf.test docker NF-latest-everything)	21m 36s
Run tests (tests/remove_ribo_rna.nf.test docker NF-latest-everything)	21m 36s
Run tests (modules/nf-core/subread/featurecounts/tests/main.nf.test docker NF-latest-everything)	5m 9s
Run tests (modules/nf-core/subread/featurecounts/tests/main.nf.test docker NF-latest-everything)	5m 9s
Run tests (modules/nf-core/qualimap/rnaseq/tests/main.nf.test docker NF-latest-everything)	3m 37s
Run tests (modules/nf-core/qualimap/rnaseq/tests/main.nf.test docker NF-latest-everything)	3m 37s
Run tests (modules/nf-core/rseqc/readduplication/tests/main.nf.test docker NF-latest-everything)	3m 33s
Run tests (modules/nf-core/rseqc/readduplication/tests/main.nf.test docker NF-latest-everything)	3m 33s
Run tests (modules/nf-core/fq/subsample/tests/main.nf.test docker NF-latest-everything)	3m 47s
Run tests (modules/nf-core/fq/subsample/tests/main.nf.test docker NF-latest-everything)	3m 47s
Run tests (modules/nf-core/samtools/stats/tests/main.nf.test docker NF-latest-everything)	4m 39s
Run tests (modules/nf-core/samtools/stats/tests/main.nf.test docker NF-latest-everything)	4m 39s
Run tests (subworkflows/nf-core/fastq_fastqc_umitools_trimgalore/tests/main.nf.test docker NF-latest-everything)	5m 15s
Run tests (subworkflows/nf-core/fastq_fastqc_umitools_trimgalore/tests/main.nf.test docker NF-latest-everything)	5m 15s
Run tests (modules/nf-core/preseq/lcextrap/tests/main.nf.test docker NF-latest-everything)	4m 54s
Run tests (modules/nf-core/preseq/lcextrap/tests/main.nf.test docker NF-latest-everything)	4m 54s
Run tests (tests/salmon.nf.test docker NF-latest-everything)	9m 31s
Run tests (tests/salmon.nf.test docker NF-latest-everything)	9m 31s
Run tests (modules/nf-core/rseqc/bamstat/tests/main.nf.test docker NF-latest-everything)	2m 58s
Run tests (modules/nf-core/rseqc/bamstat/tests/main.nf.test docker NF-latest-everything)	2m 58s
Run tests (modules/nf-core/rseqc/junctionsaturation/tests/main.nf.test docker NF-latest-everything)	3m 3s
Run tests (modules/nf-core/rseqc/junctionsaturation/tests/main.nf.test docker NF-latest-everything)	3m 3s
Run tests (modules/nf-core/trimgalore/tests/main.nf.test docker NF-latest-everything)	3m 14s
Run tests (modules/nf-core/trimgalore/tests/main.nf.test docker NF-latest-everything)	3m 14s
Run tests (subworkflows/local/utils_nfcore_rnaseq_pipeline/tests/main.function.nf.test docker NF-latest-everything)	6m 18s
Run tests (subworkflows/local/utils_nfcore_rnaseq_pipeline/tests/main.function.nf.test docker NF-latest-everything)	6m 18s
Run tests (subworkflows/nf-core/bam_markduplicates_picard/tests/main.nf.test docker NF-latest-everything)	4m 1s
Run tests (subworkflows/nf-core/bam_markduplicates_picard/tests/main.nf.test docker NF-latest-everything)	4m 1s
Run tests (modules/nf-core/sortmerna/tests/main.nf.test docker NF-latest-everything)	4m 4s
Run tests (modules/nf-core/sortmerna/tests/main.nf.test docker NF-latest-everything)	4m 4s
Run tests (modules/nf-core/ucsc/bedclip/tests/main.nf.test docker NF-latest-everything)	4m 44s
Run tests (modules/nf-core/ucsc/bedclip/tests/main.nf.test docker NF-latest-everything)	4m 44s
Run tests (subworkflows/local/utils_nfcore_rnaseq_pipeline/tests/main.pipeline_completion.workflow.nf.test docker NF-latest-everything)	2m 58s
Run tests (subworkflows/local/utils_nfcore_rnaseq_pipeline/tests/main.pipeline_completion.workflow.nf.test docker NF-latest-everything)	2m 58s
Run tests (modules/nf-core/gunzip/tests/main.nf.test docker NF-latest-everything)	3m 5s
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Run tests (modules/nf-core/dupradar/tests/main.nf.test docker NF-latest-everything)	3m 15s
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Run tests (tests/default.nf.test docker NF-latest-everything)	13m 38s
Run tests (tests/default.nf.test docker NF-latest-everything)	13m 38s
Run tests (modules/nf-core/bracken/bracken/tests/main.nf.test docker NF-latest-everything)	3m 51s
Run tests (modules/nf-core/bracken/bracken/tests/main.nf.test docker NF-latest-everything)	3m 51s
Run tests (tests/skip_qc.nf.test docker NF-latest-everything)	12m 16s
Run tests (tests/skip_qc.nf.test docker NF-latest-everything)	12m 16s
Run tests (modules/nf-core/hisat2/align/tests/main.nf.test docker NF-latest-everything)	6m 9s
Run tests (modules/nf-core/hisat2/align/tests/main.nf.test docker NF-latest-everything)	6m 9s
Run tests (subworkflows/nf-core/bam_dedup_stats_samtools_umitools/tests/main.nf.test docker NF-latest-everything)	3m 23s
Run tests (subworkflows/nf-core/bam_dedup_stats_samtools_umitools/tests/main.nf.test docker NF-latest-everything)	3m 23s
Run tests (modules/nf-core/samtools/sort/tests/main.nf.test docker NF-latest-everything)	3m 52s
Run tests (modules/nf-core/samtools/sort/tests/main.nf.test docker NF-latest-everything)	3m 52s
Run tests (tests/star_rsem.nf.test docker NF-latest-everything)	13m 11s
Run tests (tests/star_rsem.nf.test docker NF-latest-everything)	13m 11s
Run tests (modules/nf-core/hisat2/build/tests/main.nf.test docker NF-latest-everything)	2m 59s
Run tests (modules/nf-core/hisat2/build/tests/main.nf.test docker NF-latest-everything)	2m 59s
Run tests (modules/nf-core/samtools/flagstat/tests/main.nf.test docker NF-latest-everything)	2m 48s
Run tests (modules/nf-core/samtools/flagstat/tests/main.nf.test docker NF-latest-everything)	2m 48s
Run tests (modules/nf-core/summarizedexperiment/summarizedexperiment/tests/main.nf.test docker NF-latest-everything)	8m 34s
Run tests (modules/nf-core/summarizedexperiment/summarizedexperiment/tests/main.nf.test docker NF-latest-everything)	8m 34s
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Run tests (subworkflows/nf-core/fastq_fastqc_umitools_fastp/tests/main.nf.test docker NF-latest-everything)	8m 34s
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Run tests (modules/nf-core/kallisto/quant/tests/main.nf.test docker NF-latest-everything)	3m 25s
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Run tests (modules/nf-core/umitools/dedup/tests/main.nf.test docker NF-latest-everything)	5m 39s
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Run tests (subworkflows/nf-core/fastq_qc_trim_filter_setstrandedness/tests/main.function.nf.test docker NF-latest-everything)	2m 58s
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Run tests (subworkflows/local/quantify_rsem/tests/main.nf.test docker NF-latest-everything)	7m 6s
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Run tests (modules/nf-core/custom/tx2gene/tests/main.nf.test docker NF-latest-everything)	2m 59s
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Run tests (modules/nf-core/rsem/calculateexpression/tests/main.nf.test docker NF-latest-everything)	4m 41s
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Run tests (subworkflows/local/utils_nfcore_rnaseq_pipeline/tests/main.pipeline_initialisation.workflow.nf.test docker NF-latest-everything)	4m 55s
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Run tests (subworkflows/nf-core/utils_nfschema_plugin/tests/main.nf.test docker NF-latest-everything)	5m 25s
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Run tests (modules/nf-core/bedtools/genomecov/tests/main.nf.test docker NF-latest-everything)	5m 27s
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Run tests (modules/nf-core/star/align/tests/main.nf.test docker NF-latest-everything)	11m 31s
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Run tests (subworkflows/local/prepare_genome/tests/main.nf.test docker NF-latest-everything)	16m 22s
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Run tests (subworkflows/nf-core/quantify_pseudo_alignment/tests/main.nf.test docker NF-latest-everything)	6m 15s
Run tests (subworkflows/nf-core/quantify_pseudo_alignment/tests/main.nf.test docker NF-latest-everything)	6m 15s
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