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Update untar #1860

Run time

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Job Run time
Run pipeline with test data (23.04.0)
21m 25s
Run pipeline with test data (latest-everything)
25m 27s
Test STAR Salmon with workflow parameters (--skip_qc)
16m 0s
Test STAR Salmon with workflow parameters (--skip_trimming)
25m 57s
Test STAR Salmon with workflow parameters (--gtf false)
23m 25s
Test STAR Salmon with workflow parameters (--star_index false)
25m 55s
Test STAR Salmon with workflow parameters (--transcript_fasta false)
20m 0s
Test STAR Salmon with workflow parameters (--min_mapped_reads 90)
20m 5s
Test STAR Salmon with workflow parameters (--with_umi)
27m 24s
Test STAR Salmon with workflow parameters (--with_umi --skip_trimming)
20m 2s
Test STAR Salmon with workflow parameters (--remove_ribo_rna --skip_qualimap)
51m 50s
Test STAR Salmon with workflow parameters (--bam_csi_index)
25m 44s
Test STAR Salmon with workflow parameters (--save_align_intermeds --save_reference)
25m 9s
Test STAR Salmon with workflow parameters (--featurecounts_group_type false)
19m 21s
Test STAR Salmon with workflow parameters (--trimmer fastp)
18m 53s
Test STAR RSEM with workflow parameters (--skip_qc)
12m 56s
Test STAR RSEM with workflow parameters (--rsem_index false)
22m 39s
Test HISAT2 with workflow parameters (--skip_qc)
9m 34s
Test HISAT2 with workflow parameters (--hisat2_index false)
14m 25s
Test Salmon with workflow parameters (--skip_qc)
20m 30s
Test Salmon with workflow parameters (--skip_alignment --skip_pseudo_alignment)
7m 33s
Test Salmon with workflow parameters (--salmon_index false --transcript_fasta false)
27m 7s
8h 1m 21s