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Merge pull request #1060 from smoe/patch-1 #1864

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Merge pull request #1060 from smoe/patch-1

Merge pull request #1060 from smoe/patch-1 #1864

Run time

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Job Run time
Run pipeline with test data (23.04.0)
27m 21s
Run pipeline with test data (latest-everything)
25m 11s
Test STAR Salmon with workflow parameters (--skip_qc)
19m 9s
Test STAR Salmon with workflow parameters (--skip_trimming)
20m 43s
Test STAR Salmon with workflow parameters (--gtf false)
19m 25s
Test STAR Salmon with workflow parameters (--star_index false)
24m 7s
Test STAR Salmon with workflow parameters (--transcript_fasta false)
26m 22s
Test STAR Salmon with workflow parameters (--min_mapped_reads 90)
19m 28s
Test STAR Salmon with workflow parameters (--with_umi)
26m 5s
Test STAR Salmon with workflow parameters (--with_umi --skip_trimming)
25m 50s
Test STAR Salmon with workflow parameters (--remove_ribo_rna --skip_qualimap)
37m 52s
Test STAR Salmon with workflow parameters (--bam_csi_index)
19m 26s
Test STAR Salmon with workflow parameters (--save_align_intermeds --save_reference)
24m 8s
Test STAR Salmon with workflow parameters (--featurecounts_group_type false)
20m 23s
Test STAR Salmon with workflow parameters (--trimmer fastp)
22m 27s
Test HISAT2 with workflow parameters (--skip_qc)
9m 32s
Test HISAT2 with workflow parameters (--hisat2_index false)
17m 39s
Test Salmon with workflow parameters (--skip_qc)
17m 57s
Test Salmon with workflow parameters (--skip_alignment --skip_pseudo_alignment)
6m 2s
Test Salmon with workflow parameters (--salmon_index false --transcript_fasta false)
24m 52s
Test STAR RSEM with workflow parameters (--skip_qc)
17m 1s
Test STAR RSEM with workflow parameters (--rsem_index false)
21m 34s
7h 52m 34s