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FEAT: Uncouple uncompress and prepare genome #1882

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FEAT: Uncouple uncompress and prepare genome

FEAT: Uncouple uncompress and prepare genome #1882

Run time

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Job Run time
Test STAR RSEM with workflow parameters (--skip_qc)
2m 56s
Test HISAT2 with workflow parameters (--skip_qc)
3m 9s
Test Salmon with workflow parameters (--skip_qc)
2m 35s
Test STAR RSEM with workflow parameters (--rsem_index false)
3m 45s
Test HISAT2 with workflow parameters (--hisat2_index false)
4m 20s
Test Salmon with workflow parameters (--skip_alignment --skip_pseudo_alignment)
3m 31s
Test Salmon with workflow parameters (--salmon_index false --transcript_fasta false)
3m 31s
Run pipeline with test data (23.04.0)
3m 25s
Test STAR Salmon with workflow parameters (--skip_qc)
3m 35s
Run pipeline with test data (latest-everything)
4m 6s
Test STAR Salmon with workflow parameters (--skip_trimming)
2m 45s
Test STAR Salmon with workflow parameters (--gtf false)
3m 6s
Test STAR Salmon with workflow parameters (--star_index false)
3m 59s
Test STAR Salmon with workflow parameters (--transcript_fasta false)
2m 36s
Test STAR Salmon with workflow parameters (--min_mapped_reads 90)
3m 22s
Test STAR Salmon with workflow parameters (--with_umi)
4m 58s
Test STAR Salmon with workflow parameters (--with_umi --skip_trimming)
3m 25s
Test STAR Salmon with workflow parameters (--remove_ribo_rna --skip_qualimap)
3m 31s
Test STAR Salmon with workflow parameters (--bam_csi_index)
3m 53s
Test STAR Salmon with workflow parameters (--save_align_intermeds --save_reference)
3m 21s
Test STAR Salmon with workflow parameters (--featurecounts_group_type false)
3m 22s
Test STAR Salmon with workflow parameters (--trimmer fastp)
4m 9s
1h 17m 20s