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Reorganise local modules into subfolder/main.nf for consistency #1887

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Reorganise local modules into subfolder/main.nf for consistency

Reorganise local modules into subfolder/main.nf for consistency #1887

Run time

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Job Run time
Test STAR RSEM with workflow parameters (--skip_qc)
13m 54s
Test HISAT2 with workflow parameters (--skip_qc)
10m 10s
Test STAR RSEM with workflow parameters (--rsem_index false)
18m 15s
Test STAR Salmon with workflow parameters (--skip_qc)
16m 20s
Test HISAT2 with workflow parameters (--hisat2_index false)
25m 11s
Run pipeline with test data (23.04.0)
21m 50s
Test STAR Salmon with workflow parameters (--skip_trimming)
20m 6s
Run pipeline with test data (latest-everything)
22m 54s
Test STAR Salmon with workflow parameters (--gtf false)
21m 3s
Test Salmon with workflow parameters (--skip_qc)
15m 44s
Test Salmon with workflow parameters (--skip_alignment --skip_pseudo_alignment)
6m 5s
Test STAR Salmon with workflow parameters (--star_index false)
24m 50s
Test Salmon with workflow parameters (--salmon_index false --transcript_fasta false)
20m 4s
Test STAR Salmon with workflow parameters (--transcript_fasta false)
21m 28s
Test STAR Salmon with workflow parameters (--min_mapped_reads 90)
23m 1s
Test STAR Salmon with workflow parameters (--with_umi)
22m 44s
Test STAR Salmon with workflow parameters (--with_umi --skip_trimming)
27m 51s
Test STAR Salmon with workflow parameters (--remove_ribo_rna --skip_qualimap)
38m 0s
Test STAR Salmon with workflow parameters (--bam_csi_index)
20m 36s
Test STAR Salmon with workflow parameters (--save_align_intermeds --save_reference)
25m 33s
Test STAR Salmon with workflow parameters (--featurecounts_group_type false)
20m 34s
Test STAR Salmon with workflow parameters (--trimmer fastp)
24m 12s
7h 40m 25s