Skip to content
nf-core CI

Reorganise arguments for clearer syntax #1894

Sign in to view logs

Reorganise arguments for clearer syntax

Reorganise arguments for clearer syntax #1894

Run time

Learn about OS pricing on GitHub Actions
Job Run time
Run pipeline with test data (23.04.0)
1m 49s
Run pipeline with test data (latest-everything)
1m 50s
Test Salmon with workflow parameters (--skip_qc)
1m 53s
Test HISAT2 with workflow parameters (--skip_qc)
1m 51s
Test HISAT2 with workflow parameters (--hisat2_index false)
1m 48s
Test STAR RSEM with workflow parameters (--skip_qc)
1m 46s
Test STAR RSEM with workflow parameters (--rsem_index false)
1m 48s
Test Salmon with workflow parameters (--skip_alignment --skip_pseudo_alignment)
1m 51s
Test Salmon with workflow parameters (--salmon_index false --transcript_fasta false)
1m 47s
Test STAR Salmon with workflow parameters (--skip_qc)
1m 48s
Test STAR Salmon with workflow parameters (--skip_trimming)
1m 53s
Test STAR Salmon with workflow parameters (--gtf false)
1m 47s
Test STAR Salmon with workflow parameters (--star_index false)
1m 52s
Test STAR Salmon with workflow parameters (--transcript_fasta false)
1m 49s
Test STAR Salmon with workflow parameters (--min_mapped_reads 90)
1m 47s
Test STAR Salmon with workflow parameters (--with_umi)
1m 49s
Test STAR Salmon with workflow parameters (--with_umi --skip_trimming)
1m 50s
Test STAR Salmon with workflow parameters (--remove_ribo_rna --skip_qualimap)
1m 48s
Test STAR Salmon with workflow parameters (--bam_csi_index)
1m 48s
Test STAR Salmon with workflow parameters (--save_align_intermeds --save_reference)
1m 47s
Test STAR Salmon with workflow parameters (--featurecounts_group_type false)
1m 48s
Test STAR Salmon with workflow parameters (--trimmer fastp)
1m 49s
39m 58s