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Important! Template update for nf-core/tools v2.10 #1903

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Important! Template update for nf-core/tools v2.10

Important! Template update for nf-core/tools v2.10 #1903

Run time

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Job Run time
Run pipeline with test data (23.04.0)
25m 34s
Test HISAT2 with workflow parameters (--skip_qc)
12m 37s
Test STAR RSEM with workflow parameters (--skip_qc)
14m 37s
Test Salmon with workflow parameters (--skip_qc)
15m 54s
Test HISAT2 with workflow parameters (--hisat2_index false)
17m 54s
Run pipeline with test data (latest-everything)
20m 25s
Test STAR RSEM with workflow parameters (--rsem_index false)
19m 6s
Test Salmon with workflow parameters (--skip_alignment --skip_pseudo_alignment)
6m 1s
Test Salmon with workflow parameters (--salmon_index false --transcript_fasta false)
19m 52s
Test STAR Salmon with workflow parameters (--skip_qc)
14m 48s
Test STAR Salmon with workflow parameters (--skip_trimming)
23m 16s
Test STAR Salmon with workflow parameters (--gtf false)
25m 59s
Test STAR Salmon with workflow parameters (--star_index false)
24m 51s
Test STAR Salmon with workflow parameters (--transcript_fasta false)
19m 35s
Test STAR Salmon with workflow parameters (--min_mapped_reads 90)
22m 26s
Test STAR Salmon with workflow parameters (--with_umi)
27m 43s
Test STAR Salmon with workflow parameters (--with_umi --skip_trimming)
21m 27s
Test STAR Salmon with workflow parameters (--remove_ribo_rna --skip_qualimap)
42m 43s
Test STAR Salmon with workflow parameters (--bam_csi_index)
24m 38s
Test STAR Salmon with workflow parameters (--save_align_intermeds --save_reference)
19m 25s
Test STAR Salmon with workflow parameters (--featurecounts_group_type false)
24m 57s
Test STAR Salmon with workflow parameters (--trimmer fastp)
20m 52s
7h 44m 40s