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Merge pull request #1093 from drpatelh/fixes #1910

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Merge pull request #1093 from drpatelh/fixes

Merge pull request #1093 from drpatelh/fixes #1910

Run time

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Job Run time
Test HISAT2 with workflow parameters (--skip_qc)
9m 13s
Test Salmon with workflow parameters (--skip_qc)
15m 51s
Test HISAT2 with workflow parameters (--hisat2_index false)
15m 30s
Test STAR RSEM with workflow parameters (--skip_qc)
13m 47s
Test Salmon with workflow parameters (--skip_alignment --skip_pseudo_alignment)
7m 51s
Test STAR RSEM with workflow parameters (--rsem_index false)
17m 14s
Test Salmon with workflow parameters (--salmon_index false --transcript_fasta false)
20m 18s
Test STAR Salmon with workflow parameters (--skip_qc)
19m 18s
Run pipeline with test data (23.04.0)
24m 37s
Test STAR Salmon with workflow parameters (--skip_trimming)
18m 40s
Run pipeline with test data (latest-everything)
21m 2s
Test STAR Salmon with workflow parameters (--gtf false)
20m 32s
Test STAR Salmon with workflow parameters (--star_index false)
19m 21s
Test STAR Salmon with workflow parameters (--transcript_fasta false)
22m 38s
Test STAR Salmon with workflow parameters (--min_mapped_reads 90)
20m 1s
Test STAR Salmon with workflow parameters (--with_umi)
21m 50s
Test STAR Salmon with workflow parameters (--with_umi --skip_trimming)
25m 44s
Test STAR Salmon with workflow parameters (--remove_ribo_rna --skip_qualimap)
51m 17s
Test STAR Salmon with workflow parameters (--bam_csi_index)
24m 19s
Test STAR Salmon with workflow parameters (--save_align_intermeds --save_reference)
20m 29s
Test STAR Salmon with workflow parameters (--featurecounts_group_type false)
20m 25s
Test STAR Salmon with workflow parameters (--trimmer fastp)
19m 21s
7h 29m 18s