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Merge pull request #1042 from maxulysse/samtools_sort
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FIX: remove mem assignement for SAMTOOLS_SORT
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drpatelh authored Jun 2, 2023
2 parents f15b587 + d286eb3 commit 14ba0e0
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1 change: 1 addition & 0 deletions CHANGELOG.md
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Expand Up @@ -25,6 +25,7 @@ Thank you to everyone else that has contributed by reporting bugs, enhancements
- [PR #1016](https://github.com/nf-core/rnaseq/pull/1016) - Updated pipeline template to [nf-core/tools 2.8](https://github.com/nf-core/tools/releases/tag/2.8)
- [PR #1025](https://github.com/nf-core/fetchngs/pull/1025) - Add `public_aws_ecr.config` to source mulled containers when using `public.ecr.aws` Docker Biocontainer registry
- [PR #1038](https://github.com/nf-core/rnaseq/pull/1038) - Updated error log for count values when supplying `--additional_fasta`
- [PR #1042](https://github.com/nf-core/rnaseq/pull/1042) - revert samtools_sort modules to no memory assignement

### Parameters

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6 changes: 3 additions & 3 deletions modules.json
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Expand Up @@ -161,7 +161,7 @@
},
"samtools/sort": {
"branch": "master",
"git_sha": "911696ea0b62df80e900ef244d7867d177971f73",
"git_sha": "a0f7be95788366c1923171e358da7d049eb440f9",
"installed_by": ["bam_sort_stats_samtools"]
},
"samtools/stats": {
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"branch": "master",
"git_sha": "735e1e04e7e01751d2d6e97055bbdb6f70683cc1",
"installed_by": [
"bam_dedup_stats_samtools_umitools",
"bam_markduplicates_picard",
"bam_sort_stats_samtools"
"bam_sort_stats_samtools",
"bam_dedup_stats_samtools_umitools"
]
},
"bedgraph_bedclip_bedgraphtobigwig": {
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2 changes: 0 additions & 2 deletions modules/nf-core/samtools/sort/main.nf

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