Fix config error

nf-core · Oct 22, 2024 · cdfb98b · cdfb98b
1 parent caad7fa
commit cdfb98b
Showing 1 changed file with 1 addition and 2 deletions.
diff --git a/subworkflows/local/align_star/nextflow.config b/subworkflows/local/align_star/nextflow.config
@@ -36,11 +36,10 @@ if (!params.skip_alignment && params.aligner == 'star_salmon') {
                     generateStarAlignArgs(params.save_unaligned, params.contaminant_screening, params.extra_star_align_args + ' --quantTranscriptomeSAMoutput BanSingleEnd')
             }
         }
-        withName: 'ALIGN_STAR:STAR_ALIGN_IGENOMES' {
+        withName: '.*:ALIGN_STAR:STAR_ALIGN_IGENOMES' {
             ext.args   = {
                     generateStarAlignArgs(params.save_unaligned, params.contaminant_screening, params.extra_star_align_args + ' --quantTranscriptomeBan Singleend')
             }
-
         }
         withName: '.*:ALIGN_STAR:STAR_ALIGN|.*:ALIGN_STAR:STAR_ALIGN_IGENOMES' {