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Merge pull request #1441 from maxulysse/fix_download #3517

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Merge pull request #1441 from maxulysse/fix_download

Merge pull request #1441 from maxulysse/fix_download #3517

GitHub Actions / JUnit Test Report failed Oct 24, 2024 in 0s

2 tests run, 1 passed, 0 skipped, 1 failed.

Annotations

Check failure on line 1 in Test Subworkflow FASTQ_QC_TRIM_FILTER_SETSTRANDEDNESS

See this annotation in the file changed.

@github-actions github-actions / JUnit Test Report

Test Subworkflow FASTQ_QC_TRIM_FILTER_SETSTRANDEDNESS.homo_sapiens paired-end [fastq] fastp 

java.lang.NullPointerException: Cannot invoke method getAt() on null object
Raw output 
Nextflow stdout:

N E X T F L O W  ~  version 24.04.2
Launching `/home/runner/work/rnaseq/rnaseq/.nf-test-b6b0d6658ea42f84a1b8cf824576357.nf` [stoic_fourier] DSL2 - revision: 8890c4152d
Downloading plugin nf-schema@2.1.1
Downloading plugin nf-amazon@2.5.2
WARN: The operator `first` is useless when applied to a value channel which returns a single value by definition
Pulling Singularity image docker://quay.io/nf-core/sortmerna:4.3.7--6502243397c065ba [cache /home/runner/work/rnaseq/rnaseq/.singularity/quay.io-nf-core-sortmerna-4.3.7--6502243397c065ba.img]
Pulling Singularity image docker://quay.io/nf-core/coreutils:9.5--ae99c88a9b28c264 [cache /home/runner/work/rnaseq/rnaseq/.singularity/quay.io-nf-core-coreutils-9.5--ae99c88a9b28c264.img]
ERROR ~ Error executing process > 'FASTQ_QC_TRIM_FILTER_SETSTRANDEDNESS:SORTMERNA_INDEX'

Caused by:
  Failed to pull singularity image
    command: singularity pull  --name quay.io-nf-core-sortmerna-4.3.7--6502243397c065ba.img.pulling.1729764566792 docker://quay.io/nf-core/sortmerna:4.3.7--6502243397c065ba > /dev/null
    status : 255
    hint   : Try and increase singularity.pullTimeout in the config (current is "20m")
    message:
      INFO:    Converting OCI blobs to SIF format
      INFO:    Starting build...
      Getting image source signatures
      Copying blob sha256:403f74b0f85e9834f9d27943e5e2d26d191e619160f5477ad99adc52a4122764
      Copying blob sha256:dec6b097362e7c8d80e31302367f54d610b0e84d5c9cd5ccd300729608a54b18
      Copying blob sha256:32b824d45c6101d459f5d3c13ab8658b6f79713f3bd64e363d3f6bc98faf5d6d
      Copying blob sha256:bd9ddc54bea929a22b334e73e026d4136e5b73f5cc29942896c72e4ece69b13d
      Copying blob sha256:92dc97a3ef369828f8d35d2242b165660dada3e3496ceef9ccb9ac3290e82bf9
      Copying blob sha256:f88da01cff0bc1129f1ae80576be8f3f715d1d3394d6ba35a93aa77f9a115733
      Copying blob sha256:10b8c00c10a554f94856546f418480a7d9c8136644c0fb97c725046bd6fdb578
      Copying blob sha256:bd9ddc54bea929a22b334e73e026d4136e5b73f5cc29942896c72e4ece69b13d
      Copying blob sha256:17dc7ea432cc5ad24408dee199f29d0cdad597274cb11bd37352261849c241b2
      Copying blob sha256:bb36d6c3110d8825cd64743566e94bb2a65c4c898a8a0cd05569cbcb5689af07
      Copying blob sha256:0ea1a16bbe82e9a9906f98df703f99bb84f50b7a973057784bce54a4275781b2
      Copying blob sha256:030a47592a0a4d4536afb78188ecab3ff9fa7ee5771b2f6a5ee0d8ed139729e9
      Copying blob sha256:3acd42473c809fb7a3911a1418b68e7f53e58d3fb874f10f8cf8d0e52cf26283
      Copying blob sha256:b9e64b2ce84e44331dfe21f7b2a22fe1d8431f3060c89f46be86cc83be0244d9
      Copying config sha256:3871ed45373a286e5d2b4ec7f1758c9f75c6935e3e4d64096e6854ec211ab459
      Writing manifest to image destination
      FATAL:   While making image from oci registry: error fetching image to cache: while building SIF from layers: conveyor failed to get: while getting config: no descriptor found for reference "73877489d84adf4d3f658342242f7db192843c8c03d724af53eab7a9011ff598"



 -- Check '/home/runner/work/rnaseq/rnaseq/~/tests/b6b0d6658ea42f84a1b8cf824576357/meta/nextflow.log' file for details
Nextflow stderr:

Nextflow 24.04.4 is available - Please consider updating your version to it
View more details on GitHub Actions