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Merge pull request #44 from nf-core/deprecation #76
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| name: nf-core CI | |
| # This workflow runs the pipeline with the minimal test dataset to check that it completes without any syntax errors | |
| on: | |
| push: | |
| branches: | |
| - dev | |
| pull_request: | |
| release: | |
| types: [published] | |
| # Uncomment if we need an edge release of Nextflow again | |
| # env: NXF_EDGE: 1 | |
| jobs: | |
| test: | |
| name: Run workflow tests | |
| # Only run on push if this is the nf-core dev branch (merged PRs) | |
| if: ${{ github.event_name != 'push' || (github.event_name == 'push' && github.repository == 'nf-core/scflow') }} | |
| runs-on: ubuntu-latest | |
| env: | |
| NXF_VER: ${{ matrix.nxf_ver }} | |
| NXF_ANSI_LOG: false | |
| strategy: | |
| matrix: | |
| # Nextflow versions: check pipeline minimum and current latest | |
| nxf_ver: ['21.04.2', ''] | |
| steps: | |
| - name: Check out pipeline code | |
| uses: actions/checkout@v2 | |
| - name: Install Nextflow | |
| env: | |
| CAPSULE_LOG: none | |
| run: | | |
| wget -qO- get.nextflow.io | bash | |
| sudo mv nextflow /usr/local/bin/ | |
| - name: Run pipeline with test data | |
| run: | | |
| nextflow run ${GITHUB_WORKSPACE} -profile test,docker | |
| - name: Build new docker image | |
| if: ${{ github.event.workflow_run.conclusion == 'thiswillnevertrigger' }} | |
| run: docker build --no-cache . -t almurphy/scfdev:dev | |
| - name: Pull docker image | |
| if: ${{ github.event.workflow_run.conclusion == 'thiswillnevertrigger' }} | |
| run: | | |
| docker pull almurphy/scfdev:dev | |
| docker tag almurphy/scfdev:dev almurphy/scfdev:dev |