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Merge pull request #43 from nf-core/deprecation
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Add deprecation notice
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@maxulysse
maxulysse authored Jun 13, 2024
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## Introduction

:::warning
This pipeline has been deprecated on June 13, 2024 because it did not meet the quality standards of nf-core.
Please use the [nf-core/scdownstream](https://nf-co.re/scdownstream) pipeline instead.
:::

**nf-core/scflow** is a bioinformatics pipeline for scalable, reproducible, best-practice analyses of single-cell/nuclei RNA-sequencing data.

The pipeline is built using [Nextflow](https://www.nextflow.io), a workflow tool to run tasks across multiple compute infrastructures in a very portable manner. Full case/control sc/sn-RNAseq analyses can be orchestrated with a single line of code on a local workstation, high-performance computing cluster (HPC), or on Cloud services including Google Cloud, Amazon Web Services, Microsoft Azure, and Kubernetes. It uses Docker/Singularity containers making installation trivial and results highly reproducible.
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