Merge pull request #261 from nf-core/fix-cellranger-filename-check

fix cellranger filename check
nf-core · Aug 24, 2023 · 2c12201 · 2c12201
2 parents d2648a4 + 0bf2013
commit 2c12201
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Showing 8 changed files with 30 additions and 15 deletions.
diff --git a/CHANGELOG.md b/CHANGELOG.md
@@ -5,6 +5,8 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
 
 ## [Unpublished Version / DEV]
 
+- Fix false-positive filename check in cellranger module ([#TODO](TODO))
+
 ## v2.4.0 - 2023-08-16 Lime Platinum Crab
 
 - Fix typo causing empty version imformation for mtx_conversion subworkflow ([#254](https://github.com/nf-core/scrnaseq/pull/254))

diff --git a/assets/multiqc_config.yml b/assets/multiqc_config.yml
@@ -1,7 +1,7 @@
 report_comment: >
-  This report has been generated by the <a href="https://github.com/nf-core/scrnaseq/2.4.0" target="_blank">nf-core/scrnaseq</a>
+  This report has been generated by the <a href="https://github.com/nf-core/scrnaseq/2.5.0dev" target="_blank">nf-core/scrnaseq</a>
   analysis pipeline. For information about how to interpret these results, please see the
-  <a href="https://nf-co.re/scrnaseq/2.4.0/output" target="_blank">documentation</a>.
+  <a href="https://nf-co.re/scrnaseq/2.5.0dev/output" target="_blank">documentation</a>.
 report_section_order:
   "nf-core-scrnaseq-methods-description":
     order: -1000

diff --git a/modules.json b/modules.json
@@ -7,7 +7,7 @@
                 "nf-core": {
                     "cellranger/count": {
                         "branch": "master",
-                        "git_sha": "716ef3019b66772a817b417078edce2f7b337858",
+                        "git_sha": "1288cb1bff6f478affa34bf866e8ff13110607de",
                         "installed_by": ["modules"]
                     },
                     "cellranger/mkgtf": {
@@ -22,7 +22,7 @@
                     },
                     "custom/dumpsoftwareversions": {
                         "branch": "master",
-                        "git_sha": "911696ea0b62df80e900ef244d7867d177971f73",
+                        "git_sha": "05c280924b6c768d484c7c443dad5e605c4ff4b4",
                         "installed_by": ["modules"]
                     },
                     "fastqc": {
@@ -62,7 +62,7 @@
                     },
                     "universc": {
                         "branch": "master",
-                        "git_sha": "4b7d4863a5883b76e6bff13b6e52468fab090c5b",
+                        "git_sha": "cf67a6d7d043e2bd6a3099be84c72046fc71508f",
                         "installed_by": ["modules"]
                     }
                 }

diff --git a/modules/nf-core/cellranger/count/templates/cellranger_count.py b/modules/nf-core/cellranger/count/templates/cellranger_count.py
diff --git a/modules/nf-core/custom/dumpsoftwareversions/main.nf b/modules/nf-core/custom/dumpsoftwareversions/main.nf
diff --git a/modules/nf-core/universc/README.md b/modules/nf-core/universc/README.md
diff --git a/modules/nf-core/universc/main.nf b/modules/nf-core/universc/main.nf
diff --git a/nextflow.config b/nextflow.config
@@ -262,7 +262,7 @@ manifest {
     description     = """Pipeline for processing 10x Genomics single cell rnaseq data"""
     mainScript      = 'main.nf'
     nextflowVersion = '!>=23.04.0'
-    version = '2.4.0'
+    version = '2.5.0dev'
     doi             = '10.5281/zenodo.3568187'
 }