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correct indentation
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zxBIB Almeida,Felipe (GCBDS) EXTERNAL committed May 10, 2024
1 parent 844fbc3 commit 9a3e529
Showing 1 changed file with 1 addition and 1 deletion.
2 changes: 1 addition & 1 deletion modules/local/mtx_to_seurat.nf
Original file line number Diff line number Diff line change
Expand Up @@ -35,7 +35,7 @@ process MTX_TO_SEURAT {

// def file paths for aligners. Cellranger is normally converted with the .h5 files
// However, the emptydrops call, always generate .mtx files, thus, cellranger 'emptydrops' required a parsing
if (params.aligner in [ "cellranger", "cellrangerarc", "cellrangermulti"]) {
if (params.aligner in [ "cellranger", "cellrangerarc", "cellrangermulti" ]) {

mtx_dir = (input_type == 'custom_emptydrops_filter') ? 'emptydrops_filtered/' : ''
matrix = "${mtx_dir}matrix.mtx*"
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