Adds FASTQE for summarising FASTQ scores as emojis#66
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adamrtalbot wants to merge 158 commits intonf-core:devfrom
Open
Adds FASTQE for summarising FASTQ scores as emojis#66adamrtalbot wants to merge 158 commits intonf-core:devfrom
adamrtalbot wants to merge 158 commits intonf-core:devfrom
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Co-authored-by: Adrien Coulier <adrien.coulier@medsci.uu.se>
Co-authored-by: Karthik Nair <35717861+KarNair@users.noreply.github.com>
Input workflow
Issue with the previous implementation was that sometimes MULTIQC_PER_LANE would execute before the extra files were collected into `ch_multiqc_extra_files`, causing `null` to be added to the list of files passed to multiqc.
Important! Template update for nf-core/tools v2.14.1
…o try to limit the scope of nf-test to the tests/ dir
…update snapshots accordingly
added seqfu stats
… basename of reference / index files therein
… main workflow input
Add FastQ-Screen database multiplexing
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Warning Newer version of the nf-core template is available. Your pipeline is using an old version of the nf-core template: 3.0.2. For more documentation on how to update your pipeline, please see the nf-core documentation and Synchronisation documentation. |
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Adds FASTQE for summarising sequencing data in a user friendly format. Integrates it into the MultiQC channel so when MultiQC is updated it will add the data automatically. See here: MultiQC/MultiQC#2945
Struggling to run it locally so the tests might need to be updated.
PR checklist
nf-core lint).nf-test test main.nf.test -profile test,docker).nextflow run . -profile debug,test,docker --outdir <OUTDIR>).docs/usage.mdis updated.docs/output.mdis updated.CHANGELOG.mdis updated.README.mdis updated (including new tool citations and authors/contributors).