tweak the output folder name

nf-modules-hub · Jul 19, 2020 · c2be142 · c2be142
1 parent 68b51a0
commit c2be142
Showing 1 changed file with 2 additions and 2 deletions.
diff --git a/main.nf b/main.nf
@@ -36,14 +36,14 @@ process prokka {
    path bestContig from ch_in_prokka
 
    output:
-   path("""${genomeName}_prokka""") into ch_out_prokka
+   path("""${genomeName}""") into ch_out_prokka
 
 
    script:
    genomeName = bestContig.getName().split("\\_")[0]
 
    """
-   prokka --outdir ./${genomeName}_prokka --prefix $genomeName ${bestContig}
+   prokka --outdir ./${genomeName} --prefix $genomeName ${bestContig}
    """
 
 }