GitHub - ngs-docs/ngs-notebooks

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Name		Name	Last commit message	Last commit date
Latest commit History 47 Commits
lib		lib
.gitignore		.gitignore
README.txt		README.txt
genes.gff		genes.gff
ngs-00-update-notebooks.ipynb		ngs-00-update-notebooks.ipynb
ngs-01-install-dropbox.ipynb		ngs-01-install-dropbox.ipynb
ngs-02-install-screed.ipynb		ngs-02-install-screed.ipynb
ngs-03-install-khmer.ipynb		ngs-03-install-khmer.ipynb
ngs-10-blast.ipynb		ngs-10-blast.ipynb
ngs-11-python-and-graphing.ipynb		ngs-11-python-and-graphing.ipynb
ngs-12-python-rundown.ipynb		ngs-12-python-rundown.ipynb
ngs-31-python-and-short-reads.ipynb		ngs-31-python-and-short-reads.ipynb
ngs-41-velvet-genome-assembly.ipynb		ngs-41-velvet-genome-assembly.ipynb
ngs-42-oases-mRNAseq-assembly.ipynb		ngs-42-oases-mRNAseq-assembly.ipynb
ngs-43-trinity-mRNAseq-assembly.ipynb		ngs-43-trinity-mRNAseq-assembly.ipynb
ngs-44-kmer-distributions.ipynb		ngs-44-kmer-distributions.ipynb
ngs-51-gimme-tools.ipynb		ngs-51-gimme-tools.ipynb
ngs-5x-digital-normalization.ipynb		ngs-5x-digital-normalization.ipynb
ngs-5x-kmer-abundance-distributions-2013.ipynb		ngs-5x-kmer-abundance-distributions-2013.ipynb
ngs-61-intro-to-dicts.ipynb		ngs-61-intro-to-dicts.ipynb
ngs-62-screed-database-as-dict.ipynb		ngs-62-screed-database-as-dict.ipynb
ngs-70-hmp-diginorm.ipynb		ngs-70-hmp-diginorm.ipynb
ngs-71-hmp-partition.ipynb		ngs-71-hmp-partition.ipynb
reads.bed		reads.bed
run.sh		run.sh

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IPython notebooks for the MSU NGS summer course.

See:

http://bioinformatics.msu.edu/ngs-summer-course-2012

for more information.

C. Titus Brown, ctb@msu.edu