RLoopFusion

This package implements the loop fusion algorithm described by Kennedy and McKinley for for-loops in R. For more details about the algorithm, see the supplemental paper.

Installation

1. Download and install R from http://r-project.org/

2. Install the R packages graph, RBGL, and Rgraphviz from Bioconductor. These must be installed according to the linked directions.

3. Install the R package devtools from CRAN, with install.packages("devtools").

4. Finally, install this package from GitHub, with devtools::install_github("nick-ulle/RLoopFusion")

Note

If you have a pre-built binary, skip steps 3 and 4, open a shell terminal and run:

R CMD INSTALL RLoopFusion_0.1-0.tar.gz

Usage

See the package vignette "RLoopFusion":

library(RLoopFusion)
vignette("RLoopFusion")