Code and Data from our SARS-CoV-2 manuscript titled "Immunomodulatory fecal metabolites are associated with mortality in COVID-19 patients with respiratory failure"
R Version (4.1.1)
Performed on MacOS Monterey v 12.2.1
Processor: 2.4 GHz 8-Core Intel Core i9
Memory: 64 GB 2667 MHz DDR4
Graphics: AMD Radeon Pro 5500M 8 GB
Data Folder
Data - Contains all R images (.rds) and a single R Image (.RData) that are used in the analysis
Results Folder
Results - Contains all produced figures from the analysis
To download the data there are two options available.
Option A) Download the zipped file at: https://zenodo.org/badge/latestdoi/496329437
Option B) Enable Git Large File Storage:
Then clone the repository:
https://docs.github.com/en/repositories/creating-and-managing-repositories/cloning-a-repository
Then run the R Markdown. You may need to change the file paths in your R Markdown that you've downloaded (e.g. file paths to the R images)
To download the data:
Download the zipped file at: https://zenodo.org/badge/latestdoi/496329437